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    LOC110500211 receptor-type tyrosine-protein phosphatase zeta [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 110500211, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC110500211
    Gene description
    receptor-type tyrosine-protein phosphatase zeta
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC110500211 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 21 NC_048585.1 (30010193..30064045, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 21 NC_035097.1 (21552982..21591992, complement)

    Chromosome 21 - NC_048585.1Genomic Context describing neighboring genes Neighboring gene cAMP-dependent protein kinase type II-beta regulatory subunit Neighboring gene HMG box-containing protein 1 Neighboring gene solute carrier family 13 member 4 Neighboring gene Molybdenum cofactor synthesis protein cinnamon

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-tyrosine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-type tyrosine-protein phosphatase zeta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048585.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      30010193..30064045 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036957592.1 → XP_036813487.1  receptor-type tyrosine-protein phosphatase zeta isoform X2

      UniProtKB/TrEMBL
      A0A8K9UP70
      Conserved Domains (4) summary
      cd03122
      Location:48 → 301
      alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      cd14550
      Location:1189 → 1391
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      pfam00041
      Location:316 → 404
      fn3; Fibronectin type III domain
      cl28904
      Location:840 → 1105
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    2. XM_036957591.1 → XP_036813486.1  receptor-type tyrosine-protein phosphatase zeta isoform X1

      UniProtKB/TrEMBL
      A0A8K9Y2R8
      Conserved Domains (4) summary
      cd03122
      Location:48 → 301
      alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      cd14550
      Location:1196 → 1398
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      pfam00041
      Location:316 → 404
      fn3; Fibronectin type III domain
      cl28904
      Location:848 → 1112
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
    Nucleotide Protein
    Heading Accession and Version

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