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    Sh3tc2 SH3 domain and tetratricopeptide repeats 2 [ Mus pahari (shrew mouse) ]

    Gene ID: 110333264, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Sh3tc2
    Gene description
    SH3 domain and tetratricopeptide repeats 2
    See related
    Ensembl:MGP_PahariEiJ_G0019061
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus pahari
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
    Orthologs
    human mouse all
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    Genomic context

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    See Sh3tc2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 15 NC_034604.1 (55751892..55815498)

    Chromosome 15 - NC_034604.1Genomic Context describing neighboring genes Neighboring gene U1 small nuclear ribonucleoprotein C pseudogene Neighboring gene actin binding LIM protein family member 3 Neighboring gene uncharacterized LOC110332841 Neighboring gene uncharacterized LOC110332962 Neighboring gene adrenoceptor beta 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034604.1 Chromosome 15 Reference PAHARI_EIJ_v1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of ERBB signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in recycling endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SH3 domain and tetratricopeptide repeat-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAHARI_EIJ_v1.1

    Genomic

    1. NC_034604.1 Reference PAHARI_EIJ_v1.1

      Range
      55751892..55815498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021214828.2 → XP_021070487.2  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

      Related
      MGP_PahariEiJ_P0039467, MGP_PahariEiJ_T0039467.1
      Conserved Domains (5) summary
      cd11885
      Location:294 → 348
      SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
      sd00006
      Location:1151 → 1178
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:1192 → 1221
      TPR_1; Tetratricopeptide repeat
      pfam07653
      Location:203 → 260
      SH3_2; Variant SH3 domain
      pfam17874
      Location:826 → 897
      TPR_MalT; MalT-like TPR region

    2. XM_029547242.1 → XP_029403102.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X2

      Conserved Domains (5) summary
      cd11885
      Location:255 → 309
      SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
      sd00006
      Location:1112 → 1139
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:1153 → 1182
      TPR_1; Tetratricopeptide repeat
      pfam07653
      Location:164 → 221
      SH3_2; Variant SH3 domain
      pfam17874
      Location:787 → 858
      TPR_MalT; MalT-like TPR region
    Nucleotide Protein
    Heading Accession and Version

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