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    Vcl vinculin [ Mus caroli (Ryukyu mouse) ]

    Gene ID: 110309685, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Vcl
    Gene description
    vinculin
    See related
    Ensembl:MGP_CAROLIEiJ_G0019002
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus caroli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    human mouse all
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    Genomic context

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    See Vcl in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 14 NC_034583.1 (13702380..13798048)

    Chromosome 14 - NC_034583.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin dependent protein kinase II gamma Neighboring gene plasminogen activator, urokinase Neighboring gene adaptor related protein complex 3 subunit mu 1 Neighboring gene adenosine kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034583.1 Chromosome 14 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vinculin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAROLI_EIJ_v1.1 Primary Assembly

    Genomic

    1. NC_034583.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

      Range
      13702380..13798048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021182424.2 → XP_021038083.1  vinculin isoform X2

      UniProtKB/TrEMBL
      A0A6P5QUC3
      Related
      MGP_CAROLIEiJ_P0035760, MGP_CAROLIEiJ_T0035760.1
      Conserved Domains (1) summary
      pfam01044
      Location:3 → 1066
      Vinculin; Vinculin family

    2. XM_029468925.1 → XP_029324785.1  vinculin isoform X1

      UniProtKB/TrEMBL
      A0A6P7QIR8

    3. XM_029468926.1 → XP_029324786.1  vinculin isoform X3

      UniProtKB/TrEMBL
      A0A6P7QFS8
      Conserved Domains (1) summary
      pfam01044
      Location:3 → 1134
      Vinculin; Vinculin family
    Nucleotide Protein
    Heading Accession and Version

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