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    LOC109064588 interferon-induced, double-stranded RNA-activated protein kinase-like [ Cyprinus carpio (common carp) ]

    Gene ID: 109064588, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC109064588
    Gene description
    interferon-induced, double-stranded RNA-activated protein kinase-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinus carpio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
    Also known as
    PKR
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    Genomic context

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    See LOC109064588 in Genome Data Viewer
    Location:
    chromosome: A13
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current ASM1834038v1 (GCF_018340385.1) A13 NC_056584.1 (27221407..27230814, complement)
    100 previous assembly common carp genome (GCF_000951615.1) 7 NC_031703.1 (7709522..7786663)

    Chromosome A13 - NC_056584.1Genomic Context describing neighboring genes Neighboring gene cancer-related nucleoside-triphosphatase-like Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 3-like Neighboring gene G patch domain containing 11 Neighboring gene myopalladin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon-induced, double-stranded RNA-activated protein kinase-like
    Names
    interferon induced double-stranded RNA activated protein kinase
    interferon-induced double-standed RNA-activated protein kinase transcript

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834038v1 Primary Assembly

    Genomic

    1. NC_056584.1 Reference ASM1834038v1 Primary Assembly

      Range
      27221407..27230814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042769548.1 → XP_042625482.1  interferon-induced, double-stranded RNA-activated protein kinase-like

      UniProtKB/TrEMBL
      A0A9J8B3Q9, A0A9Q9YSA7
      Conserved Domains (3) summary
      cd19903
      Location:212 → 278
      DSRM_EIF2AK2_rpt1; first double-stranded RNA binding motif of eukaryotic translation initiation factor 2-alpha kinase 2 (EIF2AK2) and similar proteins
      cd20314
      Location:99 → 167
      DSRM_EIF2AK2; double-stranded RNA binding motif of eukaryotic translation initiation factor 2-alpha kinase 2 (EIF2AK2) and similar proteins
      cl21453
      Location:393 → 669
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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