U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    sema6c.L semaphorin 6C L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 108699427, updated on 20-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    sema6c.L
    Official Full Name
    semaphorin 6C L homeolog
    Primary source
    Xenbase:XB-GENE-17338222
    Locus tag
    XELAEV_18040647mg
    See related
    EnsemblRapid:ENSXLAG00005033469 AllianceGenome:Xenbase:XB-GENE-17338222
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Summary
    Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to act upstream of or within several processes, including negative regulation of axon extension involved in axon guidance; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Orthologous to human SEMA6C (semaphorin 6C). [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See sema6c.L in Genome Data Viewer
    Location:
    chromosome: 8L
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (127766814..127890046, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (112553601..112681396, complement)

    Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene CD48 antigen-like Neighboring gene uncharacterized LOC121397223 Neighboring gene cortexin-3 Neighboring gene uncharacterized LOC121397227 Neighboring gene TNF alpha induced protein 8 like 2 L homeolog Neighboring gene LysM, putative peptidoglycan-binding, domain containing 1 L homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    semaphorin-6D
    Names
    sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C L homeolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      127766814..127890046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018231503.2 → XP_018086992.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      A0A8J0TNK3
      Conserved Domains (2) summary
      cd11270
      Location:50 → 511
      Sema_6E; The Sema domain, a protein interacting module, semaphorin 6E (sema6E)
      pfam01437
      Location:512 → 541
      PSI; Plexin repeat

    2. XM_018231502.2 → XP_018086991.1  semaphorin-6D isoform X2

      UniProtKB/TrEMBL
      A0A1L8FCL4, A0A974H910
      Related
      ENSXLAP00005099917.1, ENSXLAT00005101858.1

    3. XM_041573634.1 → XP_041429568.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      A0A8J0TNK3
      Conserved Domains (2) summary
      cd11270
      Location:50 → 511
      Sema_6E; The Sema domain, a protein interacting module, semaphorin 6E (sema6E)
      pfam01437
      Location:512 → 541
      PSI; Plexin repeat
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases