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    LOC108183935 gastrula zinc finger protein XlCGF57.1-like [ Danio rerio (zebrafish) ]

    Gene ID: 108183935, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC108183935
    Gene description
    gastrula zinc finger protein XlCGF57.1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    See LOC108183935 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (63464959..63471359, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (61892601..61898755, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC100006562 Neighboring gene transfer RNA arginine (anticodon UCU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    gastrula zinc finger protein XlCGF57.1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      63464959..63471359 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017355760.3 → XP_017211249.1  gastrula zinc finger protein XlCGF57.1-like

      UniProtKB/TrEMBL
      A0A8M6YXT9
      Conserved Domains (3) summary
      COG5048
      Location:187 → 346
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:135 → 155
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:119 → 144
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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