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    Gm46933 predicted gene, 46933 [ Mus musculus (house mouse) ]

    Gene ID: 108169096, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm46933provided by MGI
    Official Full Name
    predicted gene, 46933provided by MGI
    Primary source
    MGI:MGI:5826570
    See related
    AllianceGenome:MGI:5826570
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in adrenal adult (RPKM 9.2), CNS E11.5 (RPKM 7.1) and 28 other tissues See more
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    Genomic context

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    See Gm46933 in Genome Data Viewer
    Location:
    5 E2; 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (92222585..92232024)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (92074726..92084165)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 22728 Neighboring gene G3BP stress granule assembly factor 2 Neighboring gene predicted gene, 42111 Neighboring gene STARR-positive B cell enhancer mm9_chr5:92512687-92512988 Neighboring gene STARR-seq mESC enhancer starr_13632 Neighboring gene uncharacterized LOC105246914 Neighboring gene STARR-seq mESC enhancer starr_13633 Neighboring gene STARR-positive B cell enhancer ABC_E11293 Neighboring gene ribosomal protein L13 pseudogene Neighboring gene USO1 vesicle docking factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ESX-1 secretion-associated protein EspI

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      92222585..92232024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321256.1 → XP_017176745.1  ESX-1 secretion-associated protein EspI

    Nucleotide Protein Strain
    Heading Accession and Version

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