U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Ppn proteoglycan-like sulfated glycoprotein papilin [ Drosophila bipectinata ]

    Gene ID: 108122624, updated on 9-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Ppn
    Gene description
    proteoglycan-like sulfated glycoprotein papilin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila bipectinata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Orthologs
    fruit fly all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ppn in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current ASM1815384v1 (GCF_018153845.1) Unplaced Scaffold NW_025063921.1 (22231366..22251246)
    101 previous assembly Dbip_2.0 (GCF_000236285.1) Unplaced Scaffold NW_016088979.1 (652861..672657, complement)

    NW_025063921.1Genomic Context describing neighboring genes Neighboring gene protein fork head Neighboring gene mitochondrial translation initiation factor 2 Neighboring gene uncharacterized LOC108122590 Neighboring gene Dynein heavy chain at 89D Neighboring gene uncharacterized LOC122321545

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    papilin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Drosophila bipectinata Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815384v1

    Genomic

    1. NW_025063921.1 Reference ASM1815384v1

      Range
      22231366..22251246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017237313.2 → XP_017092802.2  papilin isoform X4

      Conserved Domains (10) summary
      smart00131
      Location:1717 → 1765
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00408
      Location:2617 → 2679
      IGc2; Immunoglobulin C-2 Type
      smart00209
      Location:60 → 111
      TSP1; Thrombospondin type 1 repeats
      smart00409
      Location:2519 → 2599
      IG; Immunoglobulin
      cd00109
      Location:2111 → 2163
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      cd00199
      Location:2440 → 2486
      WAP; whey acidic protein-type four-disulfide core domains. Members of the family include whey acidic protein, elafin (elastase-specific inhibitor), caltrin-like protein (a calcium transport inhibitor) and other extracellular proteinase inhibitors. A group of ...
      pfam05986
      Location:214 → 329
      ADAM_spacer1; ADAM-TS Spacer 1
      NF000535
      Location:1019 → 1189
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      cd00096
      Location:2621 → 2625
      Ig; Ig strand B [structural motif]
      cl00101
      Location:1906 → 1958
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

    2. XM_017237310.2 → XP_017092799.2  papilin isoform X1

      Conserved Domains (11) summary
      smart00131
      Location:1717 → 1765
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00408
      Location:2759 → 2821
      IGc2; Immunoglobulin C-2 Type
      smart00209
      Location:60 → 111
      TSP1; Thrombospondin type 1 repeats
      smart00409
      Location:2519 → 2599
      IG; Immunoglobulin
      smart00410
      Location:2616 → 2692
      IG_like; Immunoglobulin like
      cd00109
      Location:2111 → 2163
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      cd00199
      Location:2440 → 2486
      WAP; whey acidic protein-type four-disulfide core domains. Members of the family include whey acidic protein, elafin (elastase-specific inhibitor), caltrin-like protein (a calcium transport inhibitor) and other extracellular proteinase inhibitors. A group of ...
      pfam05986
      Location:214 → 329
      ADAM_spacer1; ADAM-TS Spacer 1
      NF000535
      Location:1019 → 1189
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      cd00096
      Location:2763 → 2767
      Ig; Ig strand B [structural motif]
      cl00101
      Location:1906 → 1958
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

    3. XM_017237311.2 → XP_017092800.2  papilin isoform X2

      Conserved Domains (11) summary
      smart00131
      Location:1717 → 1765
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00408
      Location:2702 → 2764
      IGc2; Immunoglobulin C-2 Type
      smart00209
      Location:60 → 111
      TSP1; Thrombospondin type 1 repeats
      smart00409
      Location:2462 → 2542
      IG; Immunoglobulin
      smart00410
      Location:2559 → 2635
      IG_like; Immunoglobulin like
      cd00109
      Location:2054 → 2106
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      cd00199
      Location:2383 → 2429
      WAP; whey acidic protein-type four-disulfide core domains. Members of the family include whey acidic protein, elafin (elastase-specific inhibitor), caltrin-like protein (a calcium transport inhibitor) and other extracellular proteinase inhibitors. A group of ...
      pfam05986
      Location:214 → 329
      ADAM_spacer1; ADAM-TS Spacer 1
      NF000535
      Location:1019 → 1189
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      cd00096
      Location:2706 → 2710
      Ig; Ig strand B [structural motif]
      cl00101
      Location:1849 → 1901
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

    4. XM_017237312.2 → XP_017092801.2  papilin isoform X3

      Conserved Domains (10) summary
      smart00131
      Location:1717 → 1765
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00408
      Location:2637 → 2699
      IGc2; Immunoglobulin C-2 Type
      smart00209
      Location:60 → 111
      TSP1; Thrombospondin type 1 repeats
      smart00409
      Location:2397 → 2477
      IG; Immunoglobulin
      cd00109
      Location:2111 → 2163
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      cd00199
      Location:2318 → 2364
      WAP; whey acidic protein-type four-disulfide core domains. Members of the family include whey acidic protein, elafin (elastase-specific inhibitor), caltrin-like protein (a calcium transport inhibitor) and other extracellular proteinase inhibitors. A group of ...
      pfam05986
      Location:214 → 329
      ADAM_spacer1; ADAM-TS Spacer 1
      NF000535
      Location:1019 → 1189
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      cd00096
      Location:2641 → 2645
      Ig; Ig strand B [structural motif]
      cl00101
      Location:1906 → 1958
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases