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    amfra autocrine motility factor receptor a [ Sinocyclocheilus anshuiensis ]

    Gene ID: 107659867, updated on 14-Mar-2024

    Summary

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    Gene symbol
    amfra
    Gene description
    autocrine motility factor receptor a
    See related
    Ensembl:ENSSANG00000019041
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sinocyclocheilus anshuiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
    Orthologs
    human zebrafish all
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    Genomic context

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    See amfra in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current SAMN03320099.WGS_v1.1 (GCF_001515605.1) Unplaced Scaffold NW_015549640.1 (285838..302739, complement)

    NW_015549640.1Genomic Context describing neighboring genes Neighboring gene iroquois-class homeodomain protein irx-3-like Neighboring gene iroquois homeobox 5b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015549640.1 Unplaced Scaffold Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase AMFR-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sinocyclocheilus anshuiensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Genomic

    1. NW_015549640.1 Reference SAMN03320099.WGS_v1.1 Primary Assembly

      Range
      285838..302739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016448965.1 → XP_016304451.1  E3 ubiquitin-protein ligase AMFR-like

      UniProtKB/TrEMBL
      A0A671MVM8, A0A671MVQ0
      Related
      ENSSANP00000037573.1, ENSSANT00000039994.1

    2. XM_016448964.1 → XP_016304450.1  E3 ubiquitin-protein ligase AMFR-like

      UniProtKB/TrEMBL
      A0A671MVM8, A0A671MVQ0

    3. XM_016448963.1 → XP_016304449.1  E3 ubiquitin-protein ligase AMFR-like

      UniProtKB/TrEMBL
      A0A671MVM8, A0A671MVQ0
      Related
      ENSSANP00000037542.1, ENSSANT00000039963.1
    Nucleotide Protein
    Heading Accession and Version

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