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    TERF1 telomeric repeat binding factor 1 [ Coturnix japonica (Japanese quail) ]

    Gene ID: 107310275, updated on 14-Mar-2024

    Summary

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    Gene symbol
    TERF1
    Gene description
    telomeric repeat binding factor 1
    See related
    Ensembl:ENSCJPG00005011717
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coturnix japonica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
    Orthologs
    human mouse all
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    Genomic context

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    See TERF1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Coturnix japonica 2.1 (GCF_001577835.2) 2 NC_029517.1 (106601592..106623619)

    Chromosome 2 - NC_029517.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily A member 1 Neighboring gene potassium voltage-gated channel subfamily B member 2 Neighboring gene somatomedin B and thrombospondin type 1 domain containing Neighboring gene ribosomal protein L7 Neighboring gene retinol dehydrogenase 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029517.1 Chromosome 2 Reference Coturnix japonica 2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in telomere maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome, telomeric region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomeric repeat-binding factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coturnix japonica 2.1 Primary Assembly

    Genomic

    1. NC_029517.1 Reference Coturnix japonica 2.1 Primary Assembly

      Range
      106601592..106623619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015855774.2 → XP_015711260.1  telomeric repeat-binding factor 1 isoform X2

      Conserved Domains (3) summary
      smart00717
      Location:282 → 331
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:283 → 331
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl02779
      Location:18 → 217
      TRFH; Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, ...

    2. XM_015855773.2 → XP_015711259.1  telomeric repeat-binding factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C2TKV7
      Related
      ENSCJPP00005013956.1, ENSCJPT00005019975.1
      Conserved Domains (3) summary
      smart00717
      Location:303 → 352
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:304 → 352
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cd00280
      Location:18 → 217
      TRFH; Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, ...

    RNA

    1. XR_004306252.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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