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    LOC107301071 putative tyrosine-protein phosphatase auxilin [ Protobothrops mucrosquamatus ]

    Gene ID: 107301071, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC107301071
    Gene description
    putative tyrosine-protein phosphatase auxilin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Protobothrops mucrosquamatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC107301071 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015395650.1 (1040..4732, complement)

    NW_015395650.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015395650 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative tyrosine-protein phosphatase auxilin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.Mucros_1.0 Primary Assembly

    Genomic

    1. NW_015395650.1 Reference P.Mucros_1.0 Primary Assembly

      Range
      1040..4732 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015830339.2 → XP_015685825.2  putative tyrosine-protein phosphatase auxilin

      Conserved Domains (1) summary
      cl28904
      Location:43 → 152
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
    Nucleotide Protein
    Heading Accession and Version

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