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    Vps50 vacuolar protein sorting 50 [ Neodiprion lecontei (redheaded pine sawfly) ]

    Gene ID: 107222371, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Vps50
    Gene description
    vacuolar protein sorting 50
    See related
    EnsemblRapid:ENSNLCG00000002778
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neodiprion lecontei
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Diprionidae; Diprioninae; Neodiprion
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Vps50 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current iyNeoLeco1.1 (GCF_021901455.1) 7 NC_060266.1 (19307165..19312156, complement)
    100 previous assembly Nlec1.0 (GCF_001263575.1) Unplaced Scaffold NW_015384823.1 (151920..156376, complement)

    Chromosome 7 - NC_060266.1Genomic Context describing neighboring genes Neighboring gene Acetyl-CoA acetyltransferase 1 Neighboring gene sodium-dependent transporter bedraggled Neighboring gene TNF receptor-associated factor 5 Neighboring gene arylphorin subunit alpha-like Neighboring gene arylphorin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Support for the adaptive decoupling hypothesis from whole-transcriptome profiles of a hypermetamorphic and sexually dimorphic insect, Neodiprion lecontei. Herrig DK, et al. Mol Ecol, 2021 Sep. PMID 34174126
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of EARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syndetin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neodiprion lecontei Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference iyNeoLeco1.1

    Genomic

    1. NC_060266.1 Reference iyNeoLeco1.1

      Range
      19307165..19312156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015661711.2 → XP_015517197.1  syndetin isoform X1

      UniProtKB/TrEMBL
      A0A6J0BSB9
      Related
      ENSNLCP00000004338.1, ENSNLCT00000005433.1
      Conserved Domains (2) summary
      pfam10474
      Location:712 → 941
      DUF2451; Protein of unknown function C-terminus (DUF2451)
      cl19297
      Location:75 → 359
      Dor1; Dor1-like family

    2. XM_046746219.1 → XP_046602175.1  syndetin isoform X2

      Related
      ENSNLCP00000004351.1, ENSNLCT00000005445.1

    RNA

    1. XR_006905508.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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