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    egln3 egl-9 family hypoxia-inducible factor 3 [ Cyprinodon variegatus (sheepshead minnow) ]

    Gene ID: 107086869, updated on 12-Sep-2024

    Summary

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    Gene symbol
    egln3
    Gene description
    egl-9 family hypoxia-inducible factor 3
    See related
    Ensembl:ENSCVAG00000017730
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cyprinodon variegatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
    Also known as
    PHD3
    Orthologs
    human zebrafish all
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    Genomic context

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    See egln3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150617.1 (509592..516578, complement)

    NW_015150617.1Genomic Context describing neighboring genes Neighboring gene neuronal PAS domain protein 3 Neighboring gene serine palmitoyltransferase, small subunit A Neighboring gene e2f-associated phosphoprotein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015150617.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidyl-proline 4-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to hypoxia IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prolyl hydroxylase EGLN3; egl nine homolog 3
    Names
    prolyl-hydroxylase 3
    XP_015233589.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001323785.1 → NP_001310714.1  prolyl hydroxylase EGLN3

      Status: PROVISIONAL

      Source sequence(s)
      KC811527
      UniProtKB/TrEMBL
      A0A3Q2GMR1, S5Q9G2
      Conserved Domains (1) summary
      smart00702
      Location:43 → 214
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C_variegatus-1.0 Primary Assembly

    Genomic

    1. NW_015150617.1 Reference C_variegatus-1.0 Primary Assembly

      Range
      509592..516578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015378103.1 → XP_015233589.1  egl nine homolog 3

      Related
      ENSCVAP00000029685.1, ENSCVAT00000022891.1
      Conserved Domains (1) summary
      smart00702
      Location:43 → 214
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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