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    THSD1 thrombospondin type 1 domain containing 1 [ Calidris pugnax (ruff) ]

    Gene ID: 106902621, updated on 3-Aug-2024

    Summary

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    Gene symbol
    THSD1
    Gene description
    thrombospondin type 1 domain containing 1
    See related
    Ensembl:ENSCPUG00000013117
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calidris pugnax
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
    Orthologs
    human mouse all
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    Genomic context

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    See THSD1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015094510.1 (17368107..17389722)

    NW_015094510.1Genomic Context describing neighboring genes Neighboring gene cytoskeleton associated protein 2 Neighboring gene vacuolar protein sorting 36 homolog Neighboring gene fibrinogen-like protein 1 Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015094510.1 Unplaced Scaffold Reference ASM143184v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cell periphery IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thrombospondin type-1 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM143184v1

    Genomic

    1. NW_015094510.1 Reference ASM143184v1

      Range
      17368107..17389722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014966261.1 → XP_014821747.1  thrombospondin type-1 domain-containing protein 1 isoform X1

      Related
      ENSCPUP00000019039.1, ENSCPUT00000022608.1
      Conserved Domains (1) summary
      smart00209
      Location:344 → 393
      TSP1; Thrombospondin type 1 repeats

    2. XM_014966262.1 → XP_014821748.1  thrombospondin type-1 domain-containing protein 1 isoform X2

      Related
      ENSCPUP00000019040.1, ENSCPUT00000022609.1

    3. XM_014966263.1 → XP_014821749.1  thrombospondin type-1 domain-containing protein 1 isoform X3

      Conserved Domains (1) summary
      smart00209
      Location:22 → 71
      TSP1; Thrombospondin type 1 repeats
    Nucleotide Protein
    Heading Accession and Version

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