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    ESD esterase D [ Calidris pugnax (ruff) ]

    Gene ID: 106902616, updated on 3-Aug-2024

    Summary

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    Gene symbol
    ESD
    Gene description
    esterase D
    See related
    Ensembl:ENSCPUG00000012926
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calidris pugnax
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
    Orthologs
    human mouse all
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    Genomic context

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    See ESD in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015094510.1 (14861020..14875644, complement)

    NW_015094510.1Genomic Context describing neighboring genes Neighboring gene rubicon like autophagy enhancer Neighboring gene leucine rich repeats and calponin homology domain containing 1 Neighboring gene 5-hydroxytryptamine receptor 2A Neighboring gene inositol 1,4,5-trisphosphate receptor-interacting protein-like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015094510.1 Unplaced Scaffold Reference ASM143184v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-formylglutathione hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formaldehyde catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S-formylglutathione hydrolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM143184v1

    Genomic

    1. NW_015094510.1 Reference ASM143184v1

      Range
      14861020..14875644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014966249.1 → XP_014821735.1  S-formylglutathione hydrolase

      Conserved Domains (2) summary
      COG0627
      Location:1 → 282
      FrmB; S-formylglutathione hydrolase FrmB [Defense mechanisms]
      cl21494
      Location:2 → 281
      Abhydrolase; alpha/beta hydrolases

    2. XM_014966248.1 → XP_014821734.1  S-formylglutathione hydrolase

      Related
      ENSCPUP00000018811.1, ENSCPUT00000022321.1
      Conserved Domains (2) summary
      COG0627
      Location:1 → 282
      FrmB; S-formylglutathione hydrolase FrmB [Defense mechanisms]
      cl21494
      Location:2 → 281
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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