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    CCNF cyclin F [ Calidris pugnax (ruff) ]

    Gene ID: 106897864, updated on 3-Aug-2024

    Summary

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    Gene symbol
    CCNF
    Gene description
    cyclin F
    See related
    Ensembl:ENSCPUG00000010940
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calidris pugnax
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
    Orthologs
    human mouse all
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    Genomic context

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    See CCNF in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015091141.1 (695068..709700, complement)

    NW_015091141.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily A member 3 Neighboring gene VRK serine/threonine kinase 3 Neighboring gene tubulin epsilon and delta complex 2 Neighboring gene ankyrin repeat and fibronectin type-III domain-containing protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015091141.1 Unplaced Scaffold Reference ASM143184v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic cell cycle phase transition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cyclin-dependent protein kinase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM143184v1

    Genomic

    1. NW_015091141.1 Reference ASM143184v1

      Range
      695068..709700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014958808.1 → XP_014814294.1  cyclin-F isoform X2

      Related
      ENSCPUP00000015742.1, ENSCPUT00000018682.1
      Conserved Domains (3) summary
      smart00256
      Location:34 → 72
      FBOX; A Receptor for Ubiquitination Targets
      pfam00134
      Location:298 → 405
      Cyclin_N; Cyclin, N-terminal domain
      pfam02984
      Location:420 → 524
      Cyclin_C; Cyclin, C-terminal domain

    2. XM_014958807.1 → XP_014814293.1  cyclin-F isoform X1

      Conserved Domains (3) summary
      smart00256
      Location:59 → 97
      FBOX; A Receptor for Ubiquitination Targets
      pfam00134
      Location:323 → 430
      Cyclin_N; Cyclin, N-terminal domain
      pfam02984
      Location:445 → 549
      Cyclin_C; Cyclin, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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