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    TNFRSF12A TNF receptor superfamily member 12A [ Equus asinus (ass) ]

    Gene ID: 106826046, updated on 25-Dec-2024

    Summary

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    Gene symbol
    TNFRSF12A
    Gene description
    TNF receptor superfamily member 12A
    See related
    Ensembl:ENSEASG00005028268
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus asinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See TNFRSF12A in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_12 current EquAss-T2T_v2 (GCF_041296235.1) 14 NC_091803.1 (47082128..47084294, complement)
    101 previous assembly ASM1607732v2 (GCF_016077325.2) 14 NC_052190.1 (9533408..9535537)

    Chromosome 14 - NC_091803.1Genomic Context describing neighboring genes Neighboring gene BICD family like cargo adaptor 2 Neighboring gene THO complex subunit 6 Neighboring gene host cell factor C1 regulator 1 Neighboring gene claudin 6 Neighboring gene claudin 9 Neighboring gene uncharacterized LOC106826076 Neighboring gene glycine rich extracellular protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptomic data from 100 to 105 tissues from two female herbivores from seven species (cattle, sheep, goats, sika deer, horses, donkeys, and rabbits) and two breeds of sheep. Raw sequence reads
    • BioProject: PRJNA1017964
    • Publication: PMID 38734729
    • Analysis date: Wed Jan 08 13:44:37 2025

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of extrinsic apoptotic signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor receptor superfamily member 12A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_041296235.1-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquAss-T2T_v2 Primary Assembly

    Genomic

    1. NC_091803.1 Reference EquAss-T2T_v2 Primary Assembly

      Range
      47082128..47084294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014833178.3 → XP_014688664.1  tumor necrosis factor receptor superfamily member 12A

      UniProtKB/TrEMBL
      A0A8C4PIM2, A0A9L0J4E6
      Related
      ENSEASP00005048151.1
      Conserved Domains (2) summary
      cd13413
      Location:36 → 104
      TNFRSF12A; CRD2 [structural motif]
      cl22855
      Location:1 → 129
      TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
    Nucleotide Protein
    Heading Accession and Version

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