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    LOC106769780 pentatricopeptide repeat-containing protein At5g02860-like [ Vigna radiata ]

    Gene ID: 106769780, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC106769780
    Gene description
    pentatricopeptide repeat-containing protein At5g02860-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vigna radiata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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    Genomic context

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    See LOC106769780 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current Vradiata_ver6 (GCF_000741045.1) 8 NC_028358.1 (42279062..42281959, complement)

    Chromosome 8 - NC_028358.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase RHY1A Neighboring gene probable protein phosphatase 2C 63 Neighboring gene uncharacterized LOC106772660 Neighboring gene uncharacterized LOC106769616

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_028358.1 Chromosome 8 Reference Vradiata_ver6 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g02860-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vradiata_ver6 Primary Assembly

    Genomic

    1. NC_028358.1 Reference Vradiata_ver6 Primary Assembly

      Range
      42279062..42281959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014655531.2 → XP_014511017.1  pentatricopeptide repeat-containing protein At5g02860-like

      UniProtKB/TrEMBL
      A0A1S3UYI8
      Conserved Domains (5) summary
      TIGR00756
      Location:314 → 348
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:280 → 307
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:419 → 449
      PPR; PPR repeat
      pfam12854
      Location:658 → 691
      PPR_1; PPR repeat
      pfam13041
      Location:311 → 360
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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