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    PCBP2 poly(rC) binding protein 2 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 106737100, updated on 8-May-2024

    Summary

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    Gene symbol
    PCBP2
    Gene description
    poly(rC) binding protein 2
    Locus tag
    Y1Q_0009028
    See related
    EnsemblRapid:ENSAMIG00015005531
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See PCBP2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 15 NC_081838.1 (8726911..8747974, complement)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708309.1 (22711..41187, complement)

    Chromosome 15 - NC_081838.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain-containing family A member 3 Neighboring gene mitogen-activated protein kinase kinase kinase 12 Neighboring gene proline rich 13 Neighboring gene anti-Mullerian hormone receptor type 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    poly(rC)-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081838.1 Reference rAllMis1 Primary Assembly

      Range
      8726911..8747974 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059718817.1 → XP_059574800.1  poly(rC)-binding protein 2 isoform X15

      Related
      ENSAMIP00015006814.1, ENSAMIT00015009890.1

    2. XM_059718815.1 → XP_059574798.1  poly(rC)-binding protein 2 isoform X13

    3. XM_059718814.1 → XP_059574797.1  poly(rC)-binding protein 2 isoform X12

      Related
      ENSAMIP00015006815.1, ENSAMIT00015009892.1

    4. XM_059718818.1 → XP_059574801.1  poly(rC)-binding protein 2 isoform X16

    5. XM_059718816.1 → XP_059574799.1  poly(rC)-binding protein 2 isoform X14

    6. XM_059718811.1 → XP_059574794.1  poly(rC)-binding protein 2 isoform X9

    7. XM_059718810.1 → XP_059574793.1  poly(rC)-binding protein 2 isoform X8

    8. XM_059718813.1 → XP_059574796.1  poly(rC)-binding protein 2 isoform X11

    9. XM_059718812.1 → XP_059574795.1  poly(rC)-binding protein 2 isoform X10

    10. XM_059718807.1 → XP_059574790.1  poly(rC)-binding protein 2 isoform X5

      Related
      ENSAMIP00015006811.1, ENSAMIT00015009886.1

    11. XM_059718804.1 → XP_059574787.1  poly(rC)-binding protein 2 isoform X2

    12. XM_059718803.1 → XP_059574786.1  poly(rC)-binding protein 2 isoform X1

      Related
      ENSAMIP00015006809.1, ENSAMIT00015009882.1

    13. XM_059718809.1 → XP_059574792.1  poly(rC)-binding protein 2 isoform X7

    14. XM_059718808.1 → XP_059574791.1  poly(rC)-binding protein 2 isoform X6

      Related
      ENSAMIP00015006806.1, ENSAMIT00015009878.1

    15. XM_059718806.1 → XP_059574789.1  poly(rC)-binding protein 2 isoform X4

    16. XM_059718805.1 → XP_059574788.1  poly(rC)-binding protein 2 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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