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    LOC106681153 cold shock domain-containing protein CG9705 [ Halyomorpha halys (brown marmorated stink bug) ]

    Gene ID: 106681153, updated on 2-Aug-2024

    Summary

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    Gene symbol
    LOC106681153
    Gene description
    cold shock domain-containing protein CG9705
    See related
    EnsemblRapid:LOC106681153
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Halyomorpha halys
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Halyomorpha
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC106681153 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_07 current Hhal_1.1 (GCF_000696795.3) Unplaced Scaffold NW_027105402.1 (221622..223788, complement)
    100 previous assembly Hhal_1.0 (GCF_000696795.1) Unplaced Scaffold NW_014466728.1 (221273..223770, complement)

    NW_027105402.1Genomic Context describing neighboring genes Neighboring gene superoxide dismutase [Cu-Zn] Neighboring gene dynein axonemal light chain 4 Neighboring gene real-time Neighboring gene uncharacterized LOC106681152 Neighboring gene structure specific recognition protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys. Ioannidis P, et al. BMC Genomics, 2014 Aug 29. PMID 25168586, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cold shock domain-containing protein CG9705

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000696795.3-RS_2024_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Hhal_1.1 Primary Assembly

    Genomic

    1. NW_027105402.1 Reference Hhal_1.1 Primary Assembly

      Range
      221622..223788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014421324.3 → XP_014276810.1  cold shock domain-containing protein CG9705 isoform X1

      Related
      XP_014276810.1
      Conserved Domains (1) summary
      cd04458
      Location:49 → 113
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    2. XM_024362973.2 → XP_024218741.1  cold shock domain-containing protein CG9705 isoform X1

      Related
      XP_024218741.1
      Conserved Domains (1) summary
      cd04458
      Location:49 → 113
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    3. XM_067050927.1 → XP_066907028.1  cold shock domain-containing protein CG9705 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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