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    LOC106422478 G-type lectin S-receptor-like serine/threonine-protein kinase At1g61360 [ Brassica napus (rape) ]

    Gene ID: 106422478, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106422478
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase At1g61360
    Locus tag
    HID58_013542
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC106422478 in Genome Data Viewer
    Location:
    chromosome: A3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) A3 NC_063436.1 (35967604..35975590, complement)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A9 NC_027765.2 (10272340..10280264)

    Chromosome A3 - NC_063436.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106373110 Neighboring gene uncharacterized LOC106357375 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29 Neighboring gene 60S ribosomal protein L31-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At1g61360
    Names
    BnaA03g60150D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063436.1 Reference Da-Ae Primary Assembly

      Range
      35967604..35975590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013863295.3 → XP_013718749.1  G-type lectin S-receptor-like serine/threonine-protein kinase At1g61360

      UniProtKB/TrEMBL
      A0A078GM80
      Conserved Domains (4) summary
      cd00028
      Location:25 → 142
      B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...
      cd01098
      Location:327 → 416
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:504 → 775
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:201 → 310
      S_locus_glycop; S-locus glycoprotein domain
    Nucleotide Protein
    Heading Accession and Version

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