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    LOC106401302 protein NRT1/ PTR FAMILY 6.3-like [ Brassica napus (rape) ]

    Gene ID: 106401302, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106401302
    Gene description
    protein NRT1/ PTR FAMILY 6.3-like
    Locus tag
    HID58_036640
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC106401302 in Genome Data Viewer
    Location:
    chromosome: A9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) A9 NC_063442.1 (42411785..42415830, complement)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A9 NC_027765.2 (42969943..42973987, complement)

    Chromosome A9 - NC_063442.1Genomic Context describing neighboring genes Neighboring gene flavin-containing monooxygenase FMO GS-OX5-like Neighboring gene uncharacterized LOC106397179 Neighboring gene plasma membrane-associated cation-binding protein 2 Neighboring gene rho GDP-dissociation inhibitor 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nitrate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oligopeptide transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to nitrate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NRT1/ PTR FAMILY 6.3-like
    Names
    RCH2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001315634.1 → NP_001302563.1  protein NRT1/ PTR FAMILY 6.3-like

      Status: PROVISIONAL

      Source sequence(s)
      U17987
      UniProtKB/TrEMBL
      A0A816PM40, Q43390
      Conserved Domains (2) summary
      COG3104
      Location:34 → 564
      PTR2; Dipeptide/tripeptide permease [Amino acid transport and metabolism]
      pfam00854
      Location:98 → 531
      PTR2; POT family

    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063442.1 Reference Da-Ae Primary Assembly

      Range
      42411785..42415830 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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