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    LOC106174602 malignant fibrous histiocytoma-amplified sequence 1 homolog [ Lingula anatina ]

    Gene ID: 106174602, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106174602
    Gene description
    malignant fibrous histiocytoma-amplified sequence 1 homolog
    See related
    EnsemblRapid:LOC106174602
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106174602 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775747.1 (595037..600759, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013580487.1 (179043..185149, complement)

    NW_019775747.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 13-like Neighboring gene protein zer-1 homolog Neighboring gene uncharacterized LOC106174603 Neighboring gene phytanoyl-CoA dioxygenase, peroxisomal Neighboring gene uncharacterized LOC106174610

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    malignant fibrous histiocytoma-amplified sequence 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775747.1 Reference LinAna2.0 Primary Assembly

      Range
      595037..600759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024077569.1 → XP_023933337.1  malignant fibrous histiocytoma-amplified sequence 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A2R2MTK0
      Related
      XP_023933337.1, XM_024077569.1
      Conserved Domains (5) summary
      COG4886
      Location:71 → 248
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01671
      Location:869 → 946
      CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
      sd00033
      Location:78 → 100
      LRR_RI; leucine-rich repeat [structural motif]
      pfam16095
      Location:499 → 741
      COR; C-terminal of Roc, COR, domain
      cl21455
      Location:281 → 405
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_024077570.1 → XP_023933338.1  malignant fibrous histiocytoma-amplified sequence 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A2R2MTK0
      Related
      XP_023933338.1, XM_024077570.1
      Conserved Domains (5) summary
      COG4886
      Location:71 → 248
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01671
      Location:869 → 946
      CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
      sd00033
      Location:78 → 100
      LRR_RI; leucine-rich repeat [structural motif]
      pfam16095
      Location:499 → 741
      COR; C-terminal of Roc, COR, domain
      cl21455
      Location:281 → 405
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_024077571.1 → XP_023933339.1  malignant fibrous histiocytoma-amplified sequence 1 homolog isoform X2

      UniProtKB/TrEMBL
      A0A2R2MSW9
      Related
      XP_023933339.1, XM_024077571.1
      Conserved Domains (4) summary
      COG4886
      Location:71 → 248
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:78 → 100
      LRR_RI; leucine-rich repeat [structural motif]
      pfam16095
      Location:499 → 741
      COR; C-terminal of Roc, COR, domain
      cl21455
      Location:281 → 405
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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