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    LOC106171322 serine/threonine-protein kinase B-raf [ Lingula anatina ]

    Gene ID: 106171322, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106171322
    Gene description
    serine/threonine-protein kinase B-raf
    See related
    EnsemblRapid:LOC106171322
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106171322 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775813.1 (790946..814422, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013579589.1 (119759..142805)

    NW_019775813.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106171325 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene fibroblast growth factor receptor-like Neighboring gene protein slit-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase B-raf

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775813.1 Reference LinAna2.0 Primary Assembly

      Range
      790946..814422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024077760.1 → XP_023933528.1  serine/threonine-protein kinase B-raf isoform X2

      UniProtKB/TrEMBL
      A0A1S3JB12
      Related
      XP_023933528.1, XM_024077760.1
      Conserved Domains (3) summary
      cd14062
      Location:472 → 724
      STKc_Raf; Catalytic domain of the Serine/Threonine Kinases, Raf (Rapidly Accelerated Fibrosarcoma) kinases
      pfam00130
      Location:224 → 272
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl00155
      Location:144 → 212
      UBQ; Ubiquitin-like proteins

    2. XM_013551617.2 → XP_013407071.1  serine/threonine-protein kinase B-raf isoform X4

      UniProtKB/TrEMBL
      A0A1S3JA46
      Related
      XP_013407071.1, XM_013551617.2
      Conserved Domains (4) summary
      cd14062
      Location:437 → 689
      STKc_Raf; Catalytic domain of the Serine/Threonine Kinases, Raf (Rapidly Accelerated Fibrosarcoma) kinases
      pfam00069
      Location:432 → 687
      Pkinase; Protein kinase domain
      pfam00130
      Location:224 → 272
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl00155
      Location:144 → 212
      UBQ; Ubiquitin-like proteins

    3. XM_013551615.2 → XP_013407069.1  serine/threonine-protein kinase B-raf isoform X1

      UniProtKB/TrEMBL
      A0A1S3JB12
      Related
      XP_013407069.1, XM_013551615.2
      Conserved Domains (3) summary
      cd14062
      Location:472 → 724
      STKc_Raf; Catalytic domain of the Serine/Threonine Kinases, Raf (Rapidly Accelerated Fibrosarcoma) kinases
      pfam00130
      Location:224 → 272
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl00155
      Location:144 → 212
      UBQ; Ubiquitin-like proteins

    4. XM_013551616.2 → XP_013407070.1  serine/threonine-protein kinase B-raf isoform X3

      UniProtKB/TrEMBL
      A0A1S3J9J0
      Related
      XP_013407070.1, XM_013551616.2
      Conserved Domains (4) summary
      cd14062
      Location:456 → 708
      STKc_Raf; Catalytic domain of the Serine/Threonine Kinases, Raf (Rapidly Accelerated Fibrosarcoma) kinases
      pfam00069
      Location:451 → 706
      Pkinase; Protein kinase domain
      pfam00130
      Location:224 → 272
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl00155
      Location:144 → 212
      UBQ; Ubiquitin-like proteins

    5. XM_013551619.2 → XP_013407073.1  serine/threonine-protein kinase B-raf isoform X5

      UniProtKB/TrEMBL
      A0A1S3J9T0
      Related
      XP_013407073.1, XM_013551619.2
      Conserved Domains (4) summary
      cd14062
      Location:421 → 673
      STKc_Raf; Catalytic domain of the Serine/Threonine Kinases, Raf (Rapidly Accelerated Fibrosarcoma) kinases
      pfam00069
      Location:416 → 671
      Pkinase; Protein kinase domain
      pfam00130
      Location:224 → 272
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      cl00155
      Location:144 → 212
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
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