U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC106170360 uncharacterized LOC106170360 [ Lingula anatina ]

    Gene ID: 106170360, updated on 25-Jan-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC106170360
    Gene description
    uncharacterized LOC106170360
    See related
    EnsemblRapid:LOC106170360
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC106170360 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775474.1 (25231..54226, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013579388.1 (25231..54226, complement)

    NW_019775474.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106170358 Neighboring gene pleckstrin homology domain-containing family G member 7 Neighboring gene tyramine receptor Ser-2-like Neighboring gene zinc phosphodiesterase ELAC protein 1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC106170360

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775474.1 Reference LinAna2.0 Primary Assembly

      Range
      25231..54226 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024076608.1 → XP_023932376.1  uncharacterized protein LOC106170360

      UniProtKB/TrEMBL
      A0A2R2MQ63
      Related
      XP_023932376.1, XM_024076608.1
      Conserved Domains (13) summary
      smart00317
      Location:5219 → 5335
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam02008
      Location:880 → 925
      zf-CXXC; CXXC zinc finger domain
      sd00025
      Location:1135 → 1158
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd15506
      Location:1094 → 1140
      PHD1_KMT2A_like; PHD finger 1 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      cd15508
      Location:1225 → 1281
      PHD3_KMT2A_like; PHD finger 3 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      cd15664
      Location:2007 → 2111
      ePHD_KMT2A_like; Extended PHD finger found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      pfam05964
      Location:2159 → 2206
      FYRN; F/Y-rich N-terminus
      pfam05965
      Location:5049 → 5130
      FYRC; F/Y rich C-terminus
      pfam15279
      Location:2936 → 3141
      SOBP; Sine oculis-binding protein
      cl02556
      Location:1790 → 1916
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl02596
      Location:617 → 699
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
      cl22851
      Location:1142 → 1187
      PHD_SF; PHD finger superfamily
      cl25751
      Location:3545 → 3960
      DUF4045; Domain of unknown function (DUF4045)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases