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    LOC105904956 E3 ubiquitin-protein ligase RING2-A [ Clupea harengus (Atlantic herring) ]

    Gene ID: 105904956, updated on 19-Nov-2024

    Summary

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    Gene symbol
    LOC105904956
    Gene description
    E3 ubiquitin-protein ligase RING2-A
    See related
    Ensembl:ENSCHAG00020002963
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Clupea harengus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
    Also known as
    ring1
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    Genomic context

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    See LOC105904956 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Ch_v2.0.2 (GCF_900700415.2) 19 NC_045170.1 (8533585..8539666, complement)

    Chromosome 19 - NC_045170.1Genomic Context describing neighboring genes Neighboring gene Ig-like domain-containing protein Neighboring gene VPS52 subunit of GARP complex Neighboring gene ribosomal protein S18 Neighboring gene solute carrier family 39 member 7 Neighboring gene vacuolar protein sorting 45 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045170.1 Chromosome 19 Reference Ch_v2.0.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PcG protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RING2-A; E3 ubiquitin-protein ligase RING2-B
    Names
    ring finger protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ch_v2.0.2 Primary Assembly

    Genomic

    1. NC_045170.1 Reference Ch_v2.0.2 Primary Assembly

      Range
      8533585..8539666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031585626.2 → XP_031441486.1  E3 ubiquitin-protein ligase RING2-B isoform X3

      UniProtKB/TrEMBL
      A0A6P8H2R5
      Conserved Domains (3) summary
      TIGR00599
      Location:13 → 163
      rad18; DNA repair protein rad18
      cd16740
      Location:15 → 61
      RING-HC_RING2; RING finger, HC subclass, found in really interesting new gene 2 protein (RING2) and similar proteins
      cd17166
      Location:210 → 333
      RAWUL_RING1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in really interesting new gene 1 protein (RING1)

    2. XM_012832919.3 → XP_012688373.1  E3 ubiquitin-protein ligase RING2-A isoform X2

      See identical proteins and their annotated locations for XP_012688373.1

      UniProtKB/TrEMBL
      A0A6P3W2Y0
      Conserved Domains (4) summary
      COG5222
      Location:5 → 100
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      TIGR00599
      Location:42 → 192
      rad18; DNA repair protein rad18
      cd16740
      Location:44 → 90
      RING-HC_RING2; RING finger, HC subclass, found in really interesting new gene 2 protein (RING2) and similar proteins
      cd17166
      Location:239 → 362
      RAWUL_RING1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in really interesting new gene 1 protein (RING1)

    3. XM_012832918.3 → XP_012688372.1  E3 ubiquitin-protein ligase RING2-A isoform X2

      See identical proteins and their annotated locations for XP_012688372.1

      UniProtKB/TrEMBL
      A0A6P3W2Y0
      Conserved Domains (4) summary
      COG5222
      Location:5 → 100
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      TIGR00599
      Location:42 → 192
      rad18; DNA repair protein rad18
      cd16740
      Location:44 → 90
      RING-HC_RING2; RING finger, HC subclass, found in really interesting new gene 2 protein (RING2) and similar proteins
      cd17166
      Location:239 → 362
      RAWUL_RING1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in really interesting new gene 1 protein (RING1)

    4. XM_042710687.1 → XP_042566621.1  E3 ubiquitin-protein ligase RING2-A isoform X1

      UniProtKB/TrEMBL
      A0A8M1KRD6
      Related
      ENSCHAP00020005842.1, ENSCHAT00020006327.1
      Conserved Domains (4) summary
      COG5222
      Location:19 → 114
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      TIGR00599
      Location:56 → 206
      rad18; DNA repair protein rad18
      cd16740
      Location:58 → 104
      RING-HC_RING2; RING finger, HC subclass, found in really interesting new gene 2 protein (RING2) and similar proteins
      cd17166
      Location:253 → 376
      RAWUL_RING1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in really interesting new gene 1 protein (RING1)

    5. XM_042710688.1 → XP_042566622.1  E3 ubiquitin-protein ligase RING2-B isoform X3

      UniProtKB/TrEMBL
      A0A6P8H2R5
      Conserved Domains (3) summary
      TIGR00599
      Location:13 → 163
      rad18; DNA repair protein rad18
      cd16740
      Location:15 → 61
      RING-HC_RING2; RING finger, HC subclass, found in really interesting new gene 2 protein (RING2) and similar proteins
      cd17166
      Location:210 → 333
      RAWUL_RING1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in really interesting new gene 1 protein (RING1)
    Nucleotide Protein
    Heading Accession and Version

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