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    CNOT6 CCR4-NOT transcription complex subunit 6 [ Cercocebus atys (sooty mangabey) ]

    Gene ID: 105590422, updated on 13-Mar-2024

    Summary

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    Gene symbol
    CNOT6
    Gene description
    CCR4-NOT transcription complex subunit 6
    See related
    Ensembl:ENSCATG00000042014
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cercocebus atys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
    Orthologs
    human mouse all
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    Genomic context

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    See CNOT6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012001120.1 (2741174..2828066)

    NW_012001120.1Genomic Context describing neighboring genes Neighboring gene glutamine-fructose-6-phosphate transaminase 2 Neighboring gene uncharacterized LOC105590421 Neighboring gene secretoglobin family 3A member 1 Neighboring gene fms related receptor tyrosine kinase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012001120.1 Unplaced Scaffold Reference Caty_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caty_1.0

    Genomic

    1. NW_012001120.1 Reference Caty_1.0

      Range
      2741174..2828066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012069982.1 → XP_011925372.1  CCR4-NOT transcription complex subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_011925372.1

      UniProtKB/TrEMBL
      A0A2K5NMV3
      Conserved Domains (3) summary
      cd10313
      Location:191 → 540
      Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
      COG4886
      Location:52 → 159
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:33 → 52
      LRR_1; leucine-rich repeat [structural motif]

    2. XM_012069980.1 → XP_011925370.1  CCR4-NOT transcription complex subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_011925370.1

      UniProtKB/TrEMBL
      A0A2K5NMV3
      Related
      ENSCATP00000038698.1, ENSCATT00000063005.1
      Conserved Domains (3) summary
      cd10313
      Location:191 → 540
      Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
      COG4886
      Location:52 → 159
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:33 → 52
      LRR_1; leucine-rich repeat [structural motif]

    3. XM_012069984.1 → XP_011925374.1  CCR4-NOT transcription complex subunit 6 isoform X2

      Conserved Domains (1) summary
      cd10313
      Location:100 → 449
      Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6

    4. XM_012069981.1 → XP_011925371.1  CCR4-NOT transcription complex subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_011925371.1

      UniProtKB/TrEMBL
      A0A2K5NMV3
      Related
      ENSCATP00000038700.1, ENSCATT00000063007.1
      Conserved Domains (3) summary
      cd10313
      Location:191 → 540
      Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
      COG4886
      Location:52 → 159
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:33 → 52
      LRR_1; leucine-rich repeat [structural motif]

    5. XM_012069983.1 → XP_011925373.1  CCR4-NOT transcription complex subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_011925373.1

      UniProtKB/TrEMBL
      A0A2K5NMV3
      Conserved Domains (3) summary
      cd10313
      Location:191 → 540
      Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
      COG4886
      Location:52 → 159
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:33 → 52
      LRR_1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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