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    PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [ Colobus angolensis palliatus ]

    Gene ID: 105523277, updated on 13-Mar-2024

    Summary

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    Gene symbol
    PLOD2
    Gene description
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
    See related
    Ensembl:ENSCANG00000032726
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colobus angolensis palliatus (sub-species: palliatus)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
    Orthologs
    human mouse all
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    Genomic context

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    See PLOD2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012118043.1 (479920..569120)

    NW_012118043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105523275 Neighboring gene phospholipid scramblase 4 Neighboring gene ganglioside GM2 activator pseudogene Neighboring gene protein SET pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012118043.1 Unplaced Scaffold Reference Cang.pa_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-lysine 5-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cang.pa_1.0

    Genomic

    1. NW_012118043.1 Reference Cang.pa_1.0

      Range
      479920..569120
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011958067.1 → XP_011813457.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

      See identical proteins and their annotated locations for XP_011813457.1

      UniProtKB/TrEMBL
      A0A2K5IQC0
      Related
      ENSCANP00000018662.1, ENSCANT00000041619.1
      Conserved Domains (1) summary
      smart00702
      Location:593 → 756
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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