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    ZNF682 zinc finger protein 682 [ Colobus angolensis palliatus ]

    Gene ID: 105505203, updated on 13-Mar-2024

    Summary

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    Gene symbol
    ZNF682
    Gene description
    zinc finger protein 682
    See related
    Ensembl:ENSCANG00000036932
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colobus angolensis palliatus (sub-species: palliatus)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
    Orthologs
    human all
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    Genomic context

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    See ZNF682 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012123931.1 (6570331..6608095)

    NW_012123931.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 682-like Neighboring gene zinc finger protein 93-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012123931.1 Unplaced Scaffold Reference Cang.pa_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 682

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cang.pa_1.0

    Genomic

    1. NW_012123931.1 Reference Cang.pa_1.0

      Range
      6570331..6608095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011933001.1 → XP_011788391.1  zinc finger protein 682 isoform X1

      UniProtKB/TrEMBL
      A0A2K5JDX3
      Related
      ENSCANP00000027021.1, ENSCANT00000050038.1
      Conserved Domains (5) summary
      smart00349
      Location:4 → 64
      KRAB; krueppel associated box
      COG5048
      Location:292 → 474
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:371 → 391
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 43
      KRAB; KRAB box
      pfam13465
      Location:215 → 239
      zf-H2C2_2; Zinc-finger double domain

    2. XM_011933003.1 → XP_011788393.1  zinc finger protein 682 isoform X2

      See identical proteins and their annotated locations for XP_011788393.1

      Conserved Domains (4) summary
      smart00349
      Location:1 → 32
      KRAB; krueppel associated box
      COG5048
      Location:260 → 442
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:339 → 359
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:183 → 207
      zf-H2C2_2; Zinc-finger double domain

    3. XM_011933004.1 → XP_011788394.1  zinc finger protein 682 isoform X3

      Conserved Domains (3) summary
      COG5048
      Location:202 → 384
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:281 → 301
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:125 → 149
      zf-H2C2_2; Zinc-finger double domain

    4. XM_011933002.1 → XP_011788392.1  zinc finger protein 682 isoform X2

      See identical proteins and their annotated locations for XP_011788392.1

      Conserved Domains (4) summary
      smart00349
      Location:1 → 32
      KRAB; krueppel associated box
      COG5048
      Location:260 → 442
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:339 → 359
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:183 → 207
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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