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    alph protein phosphatase alphabet [ Plutella xylostella (diamondback moth) ]

    Gene ID: 105384843, updated on 9-Oct-2024

    Summary

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    Gene symbol
    alph
    Gene description
    protein phosphatase alphabet
    See related
    EnsemblRapid:ENSPXYG00000013934
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Plutella xylostella
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Plutellidae; Plutella
    Orthologs
    fruit fly all
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    Genomic context

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    See alph in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current ilPluXylo3.1 (GCF_932276165.1) 25 NC_064005.1 (8911476..8918549)
    102 previous assembly Haplomerged_assembly (GCF_905116875.1) Unplaced Scaffold NW_024010937.1 (1072463..1079643, complement)

    Chromosome 25 - NC_064005.1Genomic Context describing neighboring genes Neighboring gene B-cell receptor CD22 Neighboring gene uncharacterized LOC105384842 Neighboring gene uncharacterized LOC125490555 Neighboring gene uncharacterized LOC105384844 Neighboring gene protein preli-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of stress-activated MAPK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein phosphatase alphabet
    Names
    protein phosphatase 1B
    protein phosphatase 2c beta
    NP_001306950.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320021.1 → NP_001306950.1  protein phosphatase alphabet

      Status: PROVISIONAL

      Source sequence(s)
      KJ815047
      UniProtKB/TrEMBL
      A0A0G2R347
      Related
      ENSPXYP00000016270.1, ENSPXYT00000022997.1
      Conserved Domains (2) summary
      cd00143
      Location:23 → 282
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
      pfam07830
      Location:276 → 358
      PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

    RefSeqs of Annotated Genomes: Plutella xylostella Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ilPluXylo3.1

    Genomic

    1. NC_064005.1 Reference ilPluXylo3.1

      Range
      8911476..8918549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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