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    FOXF2-DT FOXF2 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105374880, updated on 10-Dec-2024

    Summary

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    Official Symbol
    FOXF2-DTprovided by HGNC
    Official Full Name
    FOXF2 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:50662
    See related
    AllianceGenome:HGNC:50662
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See FOXF2-DT in Genome Data Viewer
    Location:
    6p25.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (1383790..1391059, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (1246978..1254248, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (1384025..1391294, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374879 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:1286792-1287991 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1312787-1313503 Neighboring gene long intergenic non-protein coding RNA 1394 Neighboring gene forkhead box Q1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:1348887-1349536 Neighboring gene Uncharacterized LOC132932482 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:1378296-1378809 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16819 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1384005-1384784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1384785-1385564 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:1390993-1391858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1400269-1400770 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:1402119-1402268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1407479-1408328 Neighboring gene microRNA 6720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:1410403-1411023 Neighboring gene forkhead box F2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1416044-1417026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1433994-1434664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1437542-1438506 Neighboring gene uncharacterized LOC102723944 Neighboring gene uncharacterized LOC105374883 Neighboring gene uncharacterized LOC124901238 Neighboring gene RNA, 7SL, cytoplasmic 352, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_189292.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL034346

    2. NR_189293.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL034346

    3. NR_189294.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL034346

    4. NR_189295.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL034346

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      1383790..1391059 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      1246978..1254248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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