U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Smr Smrter [ Camponotus floridanus (Florida carpenter ant) ]

    Gene ID: 105253422, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Smr
    Gene description
    Smrter
    Locus tag
    EAG_15373
    See related
    EnsemblRapid:LOC105253422
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camponotus floridanus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus
    Orthologs
    fruit fly honey bee all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Smr in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current Cflo_v7.5 (GCF_003227725.1) Unplaced Scaffold NW_020229525.1 (262368..333981)
    101 previous assembly CamFlo_1.0 (GCF_000147175.1) Unplaced Scaffold NW_011882369.1 (200595..235837)

    NW_020229525.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and BTB/POZ domain-containing protein BTBD11 Neighboring gene sulfated surface glycoprotein 185-like Neighboring gene mitochondrial ribosomal protein L44 Neighboring gene location of vulva defective 1 Neighboring gene zinc finger protein GLI1 Neighboring gene rhomboid-4 Neighboring gene Meckel syndrome, type 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear receptor corepressor 1
    Names
    Nuclear receptor corepressor 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Camponotus floridanus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cflo_v7.5

    Genomic

    1. NW_020229525.1 Reference Cflo_v7.5

      Range
      262368..333981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025411156.1 → XP_025266941.1  nuclear receptor corepressor 1 isoform X1

      Related
      XP_025266941.1, XM_025411156.1
      Conserved Domains (6) summary
      cd00167
      Location:1248 → 1290
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:483 → 569
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:782 → 825
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:508 → 786
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1999 → 2187
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1473 → 1779
      Atrophin-1; Atrophin-1 family

    2. XM_025411157.1 → XP_025266942.1  nuclear receptor corepressor 1 isoform X2

      Related
      XP_025266942.1, XM_025411157.1
      Conserved Domains (6) summary
      cd00167
      Location:1248 → 1290
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:483 → 569
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:782 → 825
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:508 → 786
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1998 → 2186
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1472 → 1778
      Atrophin-1; Atrophin-1 family

    3. XM_025411159.1 → XP_025266944.1  nuclear receptor corepressor 1 isoform X4

      Related
      XP_025266944.1, XM_025411159.1
      Conserved Domains (6) summary
      cd00167
      Location:1233 → 1275
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:483 → 569
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:767 → 810
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:498 → 779
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1984 → 2172
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1458 → 1764
      Atrophin-1; Atrophin-1 family

    4. XM_025411158.1 → XP_025266943.1  nuclear receptor corepressor 1 isoform X3

      Related
      XP_025266943.1, XM_025411158.1
      Conserved Domains (6) summary
      cd00167
      Location:1246 → 1288
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:481 → 567
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:780 → 823
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:506 → 784
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1997 → 2185
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1471 → 1777
      Atrophin-1; Atrophin-1 family

    5. XM_025411160.1 → XP_025266945.1  nuclear receptor corepressor 1 isoform X5

      Related
      XP_025266945.1, XM_025411160.1
      Conserved Domains (6) summary
      cd00167
      Location:1158 → 1200
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam15784
      Location:393 → 479
      GPS2_interact; G-protein pathway suppressor 2-interacting domain
      cl21498
      Location:692 → 735
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl25732
      Location:418 → 696
      SMC_N; RecF/RecN/SMC N terminal domain
      cl25742
      Location:1909 → 2097
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:1383 → 1689
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases