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    Obp1 odorant binding protein 1 [ Solenopsis invicta (red fire ant) ]

    Gene ID: 105195107, updated on 4-Oct-2024

    Summary

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    Gene symbol
    Obp1
    Gene description
    odorant binding protein 1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solenopsis invicta
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
    Also known as
    OBP
    Orthologs
    honey bee all
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    Genomic context

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    See Obp1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UNIL_Sinv_3.0 (GCF_016802725.1) 5 NC_052668.1 (20706457..20708019)
    103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521554.1 (1643006..1644537, complement)

    Chromosome 5 - NC_052668.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain-containing protein 12 Neighboring gene maspardin Neighboring gene retained Neighboring gene CREB-regulated transcription coactivator Neighboring gene mucosa-associated lymphoid tissue lymphoma translocation protein 1 Neighboring gene uncharacterized LOC105195111 Neighboring gene mitochondrial ribosomal protein L24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Odorant binding proteins of the red imported fire ant, Solenopsis invicta: an example of the problems facing the analysis of widely divergent proteins. Gotzek D, et al. PLoS One, 2011 Jan 31. PMID 21305009, Free PMC Article
    2. Large-scale identification of odorant-binding proteins and chemosensory proteins from expressed sequence tags in insects. Xu YL, et al. BMC Genomics, 2009 Dec 25. PMID 20034407, Free PMC Article
    3. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sensory perception of smell IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general odorant-binding protein 69a-like; odorant binding protein 1
    Names
    odorant-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304593.1 → NP_001291522.1  odorant binding protein 1 precursor

      See identical proteins and their annotated locations for NP_001291522.1

      Status: PROVISIONAL

      Source sequence(s)
      FJ215314
      UniProtKB/TrEMBL
      B6E9V0
      Conserved Domains (1) summary
      pfam01395
      Location:27 → 129
      PBP_GOBP; PBP/GOBP family

    RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UNIL_Sinv_3.0

    Genomic

    1. NC_052668.1 Reference UNIL_Sinv_3.0

      Range
      20706457..20708019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026133455.2 → XP_025989240.1  general odorant-binding protein 69a-like isoform X1

      Conserved Domains (1) summary
      pfam01395
      Location:27 → 129
      PBP_GOBP; PBP/GOBP family
    Nucleotide Protein
    Heading Accession and Version

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