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    MAN1 LEM domain-containing inner nuclear membrane protein MAN1 [ Harpegnathos saltator (Jerdon's jumping ant) ]

    Gene ID: 105184344, updated on 10-Oct-2024

    Summary

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    Gene symbol
    MAN1
    Gene description
    LEM domain-containing inner nuclear membrane protein MAN1
    Locus tag
    EAI_17093
    See related
    EnsemblRapid:LOC105184344
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Harpegnathos saltator
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Harpegnathos
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See MAN1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Hsal_v8.5 (GCF_003227715.1) Unplaced Scaffold NW_020229895.1 (355056..361237, complement)
    101 previous assembly HarSal_1.0 (GCF_000147195.1) Unplaced Scaffold NW_011650257.1 (389484..395734)

    NW_020229895.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112589936 Neighboring gene Unc50 RNA binding protein Neighboring gene uncharacterized LOC105184345 Neighboring gene acetyl coenzyme A synthase Neighboring gene enolase-like Neighboring gene inositol monophosphatase 1 Neighboring gene uncharacterized LOC109503965

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear envelope organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inner nuclear membrane protein Man1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Harpegnathos saltator Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Hsal_v8.5

    Genomic

    1. NW_020229895.1 Reference Hsal_v8.5

      Range
      355056..361237 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011143067.3 → XP_011141369.1  inner nuclear membrane protein Man1 isoform X1

      See identical proteins and their annotated locations for XP_011141369.1

      Related
      XP_011141369.1, XM_011143067.3
      Conserved Domains (3) summary
      cd12286
      Location:717 → 808
      RRM_Man1; RNA recognition motif in inner nuclear membrane protein Man1 (Man1) and similar proteins
      pfam03020
      Location:3 → 40
      LEM; LEM domain
      pfam09402
      Location:463 → 671
      MSC; Man1-Src1p-C-terminal domain

    2. XM_011143066.3 → XP_011141368.1  inner nuclear membrane protein Man1 isoform X1

      See identical proteins and their annotated locations for XP_011141368.1

      Related
      XP_011141368.1, XM_011143066.3
      Conserved Domains (3) summary
      cd12286
      Location:717 → 808
      RRM_Man1; RNA recognition motif in inner nuclear membrane protein Man1 (Man1) and similar proteins
      pfam03020
      Location:3 → 40
      LEM; LEM domain
      pfam09402
      Location:463 → 671
      MSC; Man1-Src1p-C-terminal domain

    3. XM_025305039.1 → XP_025160824.1  inner nuclear membrane protein Man1 isoform X1

      Related
      XP_025160824.1, XM_025305039.1
      Conserved Domains (3) summary
      cd12286
      Location:717 → 808
      RRM_Man1; RNA recognition motif in inner nuclear membrane protein Man1 (Man1) and similar proteins
      pfam03020
      Location:3 → 40
      LEM; LEM domain
      pfam09402
      Location:463 → 671
      MSC; Man1-Src1p-C-terminal domain

    4. XM_011143068.3 → XP_011141370.1  inner nuclear membrane protein Man1 isoform X2

      See identical proteins and their annotated locations for XP_011141370.1

      UniProtKB/TrEMBL
      E2BM28
      Related
      XP_011141370.1, XM_011143068.3
      Conserved Domains (3) summary
      cd12286
      Location:712 → 803
      RRM_Man1; RNA recognition motif in inner nuclear membrane protein Man1 (Man1) and similar proteins
      pfam03020
      Location:3 → 40
      LEM; LEM domain
      pfam09402
      Location:458 → 666
      MSC; Man1-Src1p-C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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