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    LOC104881083 uncharacterized LOC104881083 [ Vitis vinifera (wine grape) ]

    Gene ID: 104881083, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC104881083
    Gene description
    uncharacterized LOC104881083
    Locus tag
    VIT_00032655001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC104881083 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (1775486..1781750, complement)
    102 previous assembly 12X (GCF_000003745.3) 13 NC_012019.3 (1785142..1791459, complement)

    Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100248506 Neighboring gene uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic Neighboring gene protein NETWORKED 4B Neighboring gene methylesterase 17 Neighboring gene probable inorganic phosphate transporter 1-3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC104881083

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

      Range
      1775486..1781750 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010659864.3 → XP_010658166.1  uncharacterized protein LOC104881083

      See identical proteins and their annotated locations for XP_010658166.1

      UniProtKB/TrEMBL
      A0A438E3R3, F6HC28
      Conserved Domains (2) summary
      pfam09528
      Location:153 → 601
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam11331
      Location:1005 → 1049
      zinc_ribbon_12; Probable zinc-ribbon domain

    2. XM_010659862.3 → XP_010658164.1  uncharacterized protein LOC104881083

      See identical proteins and their annotated locations for XP_010658164.1

      UniProtKB/TrEMBL
      A0A438E3R3, F6HC28
      Conserved Domains (2) summary
      pfam09528
      Location:153 → 601
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam11331
      Location:1005 → 1049
      zinc_ribbon_12; Probable zinc-ribbon domain

    3. XM_010659863.3 → XP_010658165.1  uncharacterized protein LOC104881083

      See identical proteins and their annotated locations for XP_010658165.1

      UniProtKB/TrEMBL
      A0A438E3R3, F6HC28
      Conserved Domains (2) summary
      pfam09528
      Location:153 → 601
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam11331
      Location:1005 → 1049
      zinc_ribbon_12; Probable zinc-ribbon domain
    Nucleotide Protein
    Heading Accession and Version

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