U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC104595670 zinc-finger homeodomain protein 5-like [ Nelumbo nucifera (sacred lotus) ]

    Gene ID: 104595670, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC104595670
    Gene description
    zinc-finger homeodomain protein 5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nelumbo nucifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC104595670 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729087.1 (3766714..3769648, complement)

    NW_010729087.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2 Neighboring gene putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 Neighboring gene uncharacterized LOC104595671 Neighboring gene uncharacterized LOC104595938

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_010729087.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of developmental process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc-finger homeodomain protein 5-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Chinese Lotus 1.1 Primary Assembly

    Genomic

    1. NW_010729087.1 Reference Chinese Lotus 1.1 Primary Assembly

      Range
      3766714..3769648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010256505.2 → XP_010254807.1  zinc-finger homeodomain protein 5-like

      See identical proteins and their annotated locations for XP_010254807.1

      UniProtKB/TrEMBL
      A0A1U7ZNB6
      Conserved Domains (2) summary
      TIGR01565
      Location:299 → 355
      homeo_ZF_HD; homeobox domain, ZF-HD class
      pfam04770
      Location:143 → 196
      ZF-HD_dimer; ZF-HD protein dimerization region

    2. XM_010256504.2 → XP_010254806.1  zinc-finger homeodomain protein 5-like

      See identical proteins and their annotated locations for XP_010254806.1

      UniProtKB/TrEMBL
      A0A1U7ZNB6
      Conserved Domains (2) summary
      TIGR01565
      Location:299 → 355
      homeo_ZF_HD; homeobox domain, ZF-HD class
      pfam04770
      Location:143 → 196
      ZF-HD_dimer; ZF-HD protein dimerization region

    3. XM_010256503.2 → XP_010254805.1  zinc-finger homeodomain protein 5-like

      See identical proteins and their annotated locations for XP_010254805.1

      UniProtKB/TrEMBL
      A0A1U7ZNB6
      Conserved Domains (2) summary
      TIGR01565
      Location:299 → 355
      homeo_ZF_HD; homeobox domain, ZF-HD class
      pfam04770
      Location:143 → 196
      ZF-HD_dimer; ZF-HD protein dimerization region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases