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    KDM5A lysine demethylase 5A [ Colius striatus (speckled mousebird) ]

    Gene ID: 104549376, updated on 3-Aug-2024

    Summary

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    Gene symbol
    KDM5A
    Gene description
    lysine demethylase 5A
    Locus tag
    N325_10441
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colius striatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coliiformes; Coliidae; Colius
    Orthologs
    human mouse all
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    Genomic context

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    See KDM5A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2023_12 current bColStr4.1.hap1 (GCF_028858725.1) 1 NC_084759.1 (142721778..142772059)
    100 previous assembly ASM69071v1 (GCF_000690715.1) Unplaced Scaffold NW_010696327.1 (1745..36146)

    Chromosome 1 - NC_084759.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 3 Neighboring gene coiled-coil domain containing 77 Neighboring gene sodium- and chloride-dependent GABA transporter 2 Neighboring gene solute carrier family 6 member 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 5A
    Names
    Lysine-specific demethylase 5A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858725.1-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bColStr4.1.hap1 Primary Assembly

    Genomic

    1. NC_084759.1 Reference bColStr4.1.hap1 Primary Assembly

      Range
      142721778..142772059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_062010168.1 → XP_061866152.1  lysine-specific demethylase 5A isoform X1

    2. XM_062010177.1 → XP_061866161.1  lysine-specific demethylase 5A isoform X2

    Nucleotide Protein
    Heading Accession and Version

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