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    KDM4A lysine demethylase 4A [ Opisthocomus hoazin ]

    Gene ID: 104338857, updated on 3-Aug-2024

    Summary

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    Gene symbol
    KDM4A
    Gene description
    lysine demethylase 4A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Opisthocomus hoazin
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Opisthocomiformes; Opisthocomidae; Opisthocomus
    Orthologs
    human mouse all
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    Genomic context

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    See KDM4A in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009900082.1 (378176..414535, complement)

    NW_009900082.1Genomic Context describing neighboring genes Neighboring gene importin 13 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3 Neighboring gene protein tyrosine phosphatase receptor type F Neighboring gene hydroxypyruvate isomerase (putative)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009900082.1 Unplaced Scaffold Reference ASM69207v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: lysine-specific demethylase 4A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69207v1

    Genomic

    1. NW_009900082.1 Reference ASM69207v1

      Range
      378176..414535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009944942.1 → XP_009943244.1  LOW QUALITY PROTEIN: lysine-specific demethylase 4A

      Conserved Domains (4) summary
      smart00333
      Location:902 → 957
      TUDOR; Tudor domain
      pfam02373
      Location:134 → 250
      JmjC; JmjC domain, hydroxylase
      cd15713
      Location:721 → 830
      ePHD_JMJD2A; Extended PHD finger (ePHD) found in Jumonji domain-containing protein 2A (JMJD2A)
      cl22851
      Location:614 → 712
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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