U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LRTM1 leucine rich repeats and transmembrane domains 1 [ Aptenodytes forsteri (emperor penguin) ]

    Gene ID: 103903304, updated on 3-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LRTM1
    Gene description
    leucine rich repeats and transmembrane domains 1
    Locus tag
    AS27_11743
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aptenodytes forsteri
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LRTM1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008795909.1 (13595808..13605762)

    NW_008795909.1Genomic Context describing neighboring genes Neighboring gene ELKS/RAB6-interacting/CAST family member 2 Neighboring gene Wnt family member 5A Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 3 Neighboring gene selenoprotein K Neighboring gene actin related protein 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_008795909.1 Unplaced Scaffold Reference ASM69914v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of synapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of presynapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    leucine-rich repeat and transmembrane domain-containing protein 1
    Names
    Leucine-rich repeat and transmembrane domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69914v1

    Genomic

    1. NW_008795909.1 Reference ASM69914v1

      Range
      13595808..13605762
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009284492.1 → XP_009282767.1  leucine-rich repeat and transmembrane domain-containing protein 1

      UniProtKB/TrEMBL
      A0A087RC98
      Conserved Domains (4) summary
      sd00031
      Location:71 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam04592
      Location:252 → 303
      SelP_N; Selenoprotein P, N terminal region
      pfam12799
      Location:95 → 134
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:93 → 153
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.