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    LOC103860441 cold-regulated 413 plasma membrane protein 1-like [ Brassica rapa (field mustard) ]

    Gene ID: 103860441, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103860441
    Gene description
    cold-regulated 413 plasma membrane protein 1-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103860441 in Genome Data Viewer
    Location:
    chromosome: A3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (21596137..21596951)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (20545479..20546342)

    Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene diphthamide biosynthesis protein 3 Neighboring gene uncharacterized LOC103860440 Neighboring gene indole-3-acetic acid-amido synthetase GH3.10 Neighboring gene putative defensin-like protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cold-regulated 413 plasma membrane protein 1-like
    Names
    cold regulated 413 plasma membrane 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001302037.1 → NP_001288966.1  cold-regulated 413 plasma membrane protein 1-like

      See identical proteins and their annotated locations for NP_001288966.1

      Status: PROVISIONAL

      Source sequence(s)
      EU186366
      UniProtKB/TrEMBL
      A8IXU6, M4D9C7
      Conserved Domains (1) summary
      pfam05562
      Location:14 → 187
      WCOR413; Cold acclimation protein WCOR413

    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      21596137..21596951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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