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    BRD1 bromodomain containing 1 [ Serinus canaria (Common canary) ]

    Gene ID: 103813498, updated on 10-Oct-2024

    Summary

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    Gene symbol
    BRD1
    Gene description
    bromodomain containing 1
    See related
    EnsemblRapid:ENSSCAG00000004135
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Serinus canaria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
    Orthologs
    human mouse all
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    Genomic context

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    See BRD1 in Genome Data Viewer
    Location:
    chromosome: 1A
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_02 current serCan2020 (GCF_022539315.1) 1A NC_066314.1 (17804466..17871076, complement)

    Chromosome 1A - NC_066314.1Genomic Context describing neighboring genes Neighboring gene TAFA chemokine like family member 5 Neighboring gene zinc finger BED-type containing 4 Neighboring gene pre-mRNA-splicing factor ISY1 homolog Neighboring gene cysteine rich with EGF like domains 2 Neighboring gene ALG12 alpha-1,6-mannosyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066314.1 Chromosome 1A Reference serCan2020 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MOZ/MORF histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bromodomain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference serCan2020 Primary Assembly

    Genomic

    1. NC_066314.1 Reference serCan2020 Primary Assembly

      Range
      17804466..17871076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_050988027.1 → XP_050843984.1  bromodomain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C9MLA7

    2. XM_050988026.1 → XP_050843983.1  bromodomain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C9MLA7

    3. XM_050988025.1 → XP_050843982.1  bromodomain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C9MLA7

    4. XM_050988024.1 → XP_050843981.1  bromodomain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C9MLA7

    5. XM_050988030.1 → XP_050843987.1  bromodomain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C9MLA7

    6. XM_050988028.1 → XP_050843985.1  bromodomain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C9MLA7

    7. XM_050988029.1 → XP_050843986.1  bromodomain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C9MLA7

    8. XM_050988031.1 → XP_050843988.1  bromodomain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C9MLA7
      Related
      ENSSCAP00000005145.1, ENSSCAT00000005919.2

    9. XM_030238066.1 → XP_030093926.1  bromodomain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C9MKW6, A0A8C9MLG3
      Related
      ENSSCAP00000005149.1, ENSSCAT00000005923.2
      Conserved Domains (5) summary
      cd05839
      Location:892 → 1007
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:566 → 663
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      COG5141
      Location:139 → 576
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      pfam10513
      Location:47 → 196
      EPL1; Enhancer of polycomb-like

    10. XM_030238065.1 → XP_030093925.1  bromodomain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C9MKW6
      Conserved Domains (5) summary
      cd05839
      Location:927 → 1042
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:566 → 663
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      COG5141
      Location:139 → 576
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      pfam10513
      Location:47 → 196
      EPL1; Enhancer of polycomb-like

    11. XM_030238061.1 → XP_030093921.1  bromodomain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C9MKW6
      Conserved Domains (5) summary
      cd05839
      Location:1054 → 1169
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:566 → 663
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      COG5141
      Location:139 → 576
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      pfam10513
      Location:47 → 196
      EPL1; Enhancer of polycomb-like

    12. XM_050988032.1 → XP_050843989.1  bromodomain-containing protein 1 isoform X5

    Nucleotide Protein
    Heading Accession and Version

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