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    Bmal1 basic helix-loop-helix ARNT like 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

    Gene ID: 103750418, updated on 11-Mar-2024

    Summary

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    Gene symbol
    Bmal1
    Gene description
    basic helix-loop-helix ARNT like 1
    See related
    Ensembl:ENSNGAG00000015200
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Nannospalax galili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
    Also known as
    mop3; Arntl
    Orthologs
    human mouse all
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    Genomic context

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    See Bmal1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008355789.1 (5641457..5724258)

    NW_008355789.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115067738 Neighboring gene cofilin-1 pseudogene Neighboring gene BTB domain containing 10 Neighboring gene parathyroid hormone Neighboring gene fatty acyl-CoA reductase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008355789 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biological clock in total darkness: the Clock/MOP3 circadian system of the blind subterranean mole rat. Avivi A, et al. Proc Natl Acad Sci U S A, 2001 Nov 20. PMID 11707566, Free PMC Article
    2. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of aryl hydrocarbon receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic helix-loop-helix ARNT-like protein 1; aryl hydrocarbon receptor nuclear translocator-like protein 1
    Names
    Aryl hydrocarbon receptor nuclear translocator-like protein 1
    Brain and muscle ARNT-like 1
    aryl hydrocarbon receptor nuclear translocator like
    basic-helix-loop-helix-PAS protein MOP3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001301675.1 → NP_001288604.1  basic helix-loop-helix ARNT-like protein 1

      See identical proteins and their annotated locations for NP_001288604.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ318060
      UniProtKB/Swiss-Prot
      Q91YA9
      UniProtKB/TrEMBL
      A0A8C6R6G5
      Related
      ENSNGAP00000013721.1, ENSNGAT00000019302.1
      Conserved Domains (5) summary
      smart00091
      Location:149 → 208
      PAS; PAS domain
      cd00130
      Location:341 → 436
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:74 → 126
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:146 → 253
      PAS; PAS fold
      pfam14598
      Location:339 → 441
      PAS_11; PAS domain

    RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S.galili_v1.0 Primary Assembly

    Genomic

    1. NW_008355789.1 Reference S.galili_v1.0 Primary Assembly

      Range
      5641457..5724258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008853499.3 → XP_008851721.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C6R6G5
      Conserved Domains (3) summary
      pfam00989
      Location:168 → 275
      PAS; PAS fold
      pfam14598
      Location:361 → 463
      PAS_11; PAS domain
      cd11438
      Location:89 → 152
      bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

    2. XM_029556276.1 → XP_029412136.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C6R688, A0A8C6R6G5
      Conserved Domains (3) summary
      pfam00989
      Location:146 → 253
      PAS; PAS fold
      pfam14598
      Location:339 → 441
      PAS_11; PAS domain
      cd11438
      Location:67 → 130
      bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

    3. XM_008853502.3 → XP_008851724.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      See identical proteins and their annotated locations for XP_008851724.1

      UniProtKB/TrEMBL
      A0A8C6R688, A0A8C6R6G5
      Related
      ENSNGAP00000013711.1, ENSNGAT00000019291.1
      Conserved Domains (3) summary
      pfam00989
      Location:146 → 253
      PAS; PAS fold
      pfam14598
      Location:339 → 441
      PAS_11; PAS domain
      cd11438
      Location:67 → 130
      bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

    4. XM_029556272.1 → XP_029412132.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C6R6G5
      Conserved Domains (3) summary
      pfam00989
      Location:168 → 275
      PAS; PAS fold
      pfam14598
      Location:360 → 462
      PAS_11; PAS domain
      cd11438
      Location:89 → 152
      bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

    5. XM_029556273.1 → XP_029412133.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C6R4Q5
      Related
      ENSNGAP00000013701.1, ENSNGAT00000019281.1
      Conserved Domains (3) summary
      pfam00989
      Location:155 → 262
      PAS; PAS fold
      pfam14598
      Location:348 → 450
      PAS_11; PAS domain
      cd11438
      Location:76 → 139
      bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

    6. XM_029556274.1 → XP_029412134.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C6R4Q5
      Conserved Domains (3) summary
      pfam00989
      Location:155 → 262
      PAS; PAS fold
      pfam14598
      Location:347 → 449
      PAS_11; PAS domain
      cd11438
      Location:76 → 139
      bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

    7. XM_008853503.2 → XP_008851725.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      See identical proteins and their annotated locations for XP_008851725.1

      UniProtKB/TrEMBL
      A0A8C6R688, A0A8C6R6G5
      Conserved Domains (3) summary
      pfam00989
      Location:146 → 253
      PAS; PAS fold
      pfam14598
      Location:339 → 441
      PAS_11; PAS domain
      cd11438
      Location:67 → 130
      bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

    8. XM_029556275.1 → XP_029412135.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C6R688, A0A8C6R6G5
      Conserved Domains (3) summary
      pfam00989
      Location:146 → 253
      PAS; PAS fold
      pfam14598
      Location:339 → 441
      PAS_11; PAS domain
      cd11438
      Location:67 → 130
      bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

    9. XM_029556277.1 → XP_029412137.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X6

      Conserved Domains (1) summary
      pfam14598
      Location:89 → 191
      PAS_11; PAS domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91YA9.1 GenPept UniProtKB/Swiss-Prot:Q91YA9

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