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    LOC103723303 probable pectate lyase 8 [ Phoenix dactylifera (date palm) ]

    Gene ID: 103723303, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103723303
    Gene description
    probable pectate lyase 8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phoenix dactylifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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    Genomic context

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    See LOC103723303 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current palm_55x_up_171113_PBpolish2nd_filt_p (GCF_009389715.1) Unplaced Scaffold NW_024067805.1 (388236..393955)
    102 previous assembly DPV01 (GCF_000413155.1) Unplaced Scaffold NW_008247125.1 (70792..76550, complement)

    NW_024067805.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein kinase 2 Neighboring gene uncharacterized LOC103723298 Neighboring gene sterol 3-beta-glucosyltransferase UGT80A2-like Neighboring gene GATA transcription factor 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectate lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable pectate lyase 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phoenix dactylifera Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

    Genomic

    1. NW_024067805.1 Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

      Range
      388236..393955
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008814183.4 → XP_008812405.1  probable pectate lyase 8

      UniProtKB/TrEMBL
      A0A8B7D3R7
      Conserved Domains (1) summary
      smart00656
      Location:177 → 371
      Amb_all; Amb_all domain
    Nucleotide Protein
    Heading Accession and Version

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