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    APBB2 amyloid beta precursor protein binding family B member 2 [ Calypte anna (Anna's hummingbird) ]

    Gene ID: 103526699, updated on 3-Aug-2024

    Summary

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    Gene symbol
    APBB2
    Gene description
    amyloid beta precursor protein binding family B member 2
    See related
    EnsemblRapid:ENSCAAG00010004286
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calypte anna
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
    Orthologs
    human mouse all
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    Genomic context

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    See APBB2 in Genome Data Viewer
    Location:
    chromosome: 4A
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current bCalAnn1_v1.p (GCF_003957555.1) 4A NC_044248.1 (14304541..14474506, complement)
    100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007619480.1 (1853035..1940993, complement)

    Chromosome 4A - NC_044248.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 47 Neighboring gene NOP2/Sun RNA methyltransferase family member 7 Neighboring gene ubiquitin C-terminal hydrolase L1 Neighboring gene LIM and calponin homology domains 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amyloid-beta binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amyloid-beta A4 precursor protein-binding family B member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCalAnn1_v1.p

    Genomic

    1. NC_044248.1 Reference bCalAnn1_v1.p

      Range
      14304541..14474506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030449632.1 → XP_030305492.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X10

      Conserved Domains (4) summary
      smart00456
      Location:285 → 316
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:557 → 683
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:389 → 528
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:108 → 233
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    2. XM_030449633.1 → XP_030305493.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X10

      Related
      ENSCAAP00010006029.1, ENSCAAT00010006328.1
      Conserved Domains (4) summary
      smart00456
      Location:285 → 316
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:557 → 683
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:389 → 528
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:108 → 233
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    3. XM_030449628.1 → XP_030305488.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X6

      Conserved Domains (4) summary
      smart00456
      Location:294 → 325
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:566 → 692
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:398 → 537
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    4. XM_030449622.1 → XP_030305482.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X2

      Conserved Domains (4) summary
      smart00456
      Location:294 → 325
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:587 → 713
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:419 → 558
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    5. XM_030449626.1 → XP_030305486.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X5

      Related
      ENSCAAP00010006021.1, ENSCAAT00010006320.1
      Conserved Domains (4) summary
      smart00456
      Location:285 → 316
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:578 → 704
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:410 → 549
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:108 → 233
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    6. XM_030449625.1 → XP_030305485.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X5

      Conserved Domains (4) summary
      smart00456
      Location:285 → 316
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:578 → 704
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:410 → 549
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:108 → 233
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    7. XM_030449627.1 → XP_030305487.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X6

      Conserved Domains (4) summary
      smart00456
      Location:294 → 325
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:566 → 692
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:398 → 537
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    8. XM_030449631.1 → XP_030305491.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X9

      Conserved Domains (4) summary
      smart00456
      Location:294 → 325
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:563 → 689
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:398 → 535
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    9. XM_030449630.1 → XP_030305490.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X8

      Related
      ENSCAAP00010006019.1, ENSCAAT00010006318.1
      Conserved Domains (4) summary
      smart00456
      Location:294 → 325
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:564 → 690
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:398 → 535
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    10. XM_030449624.1 → XP_030305484.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X4

      Conserved Domains (4) summary
      smart00456
      Location:294 → 325
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:585 → 711
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:419 → 556
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    11. XM_030449629.1 → XP_030305489.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X7

      Conserved Domains (4) summary
      smart00456
      Location:295 → 326
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:565 → 691
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:399 → 536
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    12. XM_030449623.1 → XP_030305483.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X3

      Conserved Domains (4) summary
      smart00456
      Location:295 → 326
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:586 → 712
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:420 → 557
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    13. XM_030449621.1 → XP_030305481.1  amyloid-beta A4 precursor protein-binding family B member 2 isoform X1

      Conserved Domains (4) summary
      smart00456
      Location:295 → 326
      WW; Domain with 2 conserved Trp (W) residues
      cd01271
      Location:588 → 714
      PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
      cd01272
      Location:420 → 559
      PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
      NF000535
      Location:117 → 242
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    Nucleotide Protein
    Heading Accession and Version

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