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    col6a4a collagen, type VI, alpha 4a [ Stegastes partitus (bicolor damselfish) ]

    Gene ID: 103369288, updated on 11-Mar-2024

    Summary

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    Gene symbol
    col6a4a
    Gene description
    collagen, type VI, alpha 4a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Stegastes partitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
    Also known as
    col6a6
    Orthologs
    human zebrafish all
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    Genomic context

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    See col6a4a in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578996.1 (101117..194684, complement)

    NW_007578996.1Genomic Context describing neighboring genes Neighboring gene ATPase secretory pathway Ca2+ transporting 1 Neighboring gene phosphoinositide-3-kinase, regulatory subunit 4 Neighboring gene collagen alpha-4(VI) chain-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007578996 unplaced scaffold reference Stegastes_partitus-1.0.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-6(VI) chain
    Names
    collagen type VI alpha 6 chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Stegastes_partitus-1.0.2

    Genomic

    1. NW_007578996.1 Reference Stegastes_partitus-1.0.2

      Range
      101117..194684 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008297971.1 → XP_008296193.1  collagen alpha-6(VI) chain isoform X3

      UniProtKB/TrEMBL
      A0A9Y4NF80
      Conserved Domains (8) summary
      pfam01391
      Location:1663 → 1724
      Collagen; Collagen triple helix repeat (20 copies)
      smart00327
      Location:1451 → 1555
      VWA; von Willebrand factor (vWF) type A domain
      COG2304
      Location:1190 → 1342
      YfbK; Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only]
      cd01472
      Location:33 → 197
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      pfam00014
      Location:2511 → 2562
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam00092
      Location:816 → 984
      VWA; von Willebrand factor type A domain
      pfam04503
      Location:1600 → 1879
      SSDP; Single-stranded DNA binding protein, SSDP
      cl00057
      Location:228 → 387
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    2. XM_008297970.1 → XP_008296192.1  collagen alpha-6(VI) chain isoform X2

      UniProtKB/TrEMBL
      A0A9Y4NF78
      Conserved Domains (8) summary
      pfam01391
      Location:1866 → 1927
      Collagen; Collagen triple helix repeat (20 copies)
      smart00327
      Location:1654 → 1758
      VWA; von Willebrand factor (vWF) type A domain
      COG2304
      Location:1393 → 1545
      YfbK; Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only]
      cd01472
      Location:33 → 198
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      pfam00014
      Location:2657 → 2708
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam00092
      Location:1019 → 1187
      VWA; von Willebrand factor type A domain
      pfam04503
      Location:1803 → 2082
      SSDP; Single-stranded DNA binding protein, SSDP
      cl00057
      Location:431 → 590
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    3. XM_008297969.1 → XP_008296191.1  collagen alpha-6(VI) chain isoform X1

      UniProtKB/TrEMBL
      A0A9Y4NF89
      Conserved Domains (8) summary
      pfam01391
      Location:1866 → 1927
      Collagen; Collagen triple helix repeat (20 copies)
      smart00327
      Location:1654 → 1758
      VWA; von Willebrand factor (vWF) type A domain
      COG2304
      Location:1393 → 1545
      YfbK; Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only]
      cd01472
      Location:33 → 198
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      pfam00014
      Location:2714 → 2765
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam00092
      Location:1019 → 1187
      VWA; von Willebrand factor type A domain
      pfam04503
      Location:1803 → 2082
      SSDP; Single-stranded DNA binding protein, SSDP
      cl00057
      Location:431 → 590
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Nucleotide Protein
    Heading Accession and Version

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