U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC103100706 apolipoprotein C-I [ Monodelphis domestica (gray short-tailed opossum) ]

    Gene ID: 103100706, updated on 2-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC103100706
    Gene description
    apolipoprotein C-I
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Monodelphis domestica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
    Also known as
    APOC1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC103100706 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 4 NC_077230.1 (422156001..422160246, complement)
    103 previous assembly MonDom5 (GCF_000002295.2) 4 NC_008804.1 (370771969..370775842)

    Chromosome 4 - NC_077230.1Genomic Context describing neighboring genes Neighboring gene CLPTM1 regulator of GABA type A receptor forward trafficking Neighboring gene uncharacterized LOC130453956 Neighboring gene apolipoprotein C2 Neighboring gene apolipoprotein E Neighboring gene translocase of outer mitochondrial membrane 40

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cholesterol transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of lipoprotein lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of very-low-density lipoprotein particle clearance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in triglyceride metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very-low-density lipoprotein particle clearance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of high-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of very-low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    apolipoprotein C-I; uncharacterized protein LOC103100706

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMonDom1.pri

    Genomic

    1. NC_077230.1 Reference mMonDom1.pri

      Range
      422156001..422160246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056796369.1 → XP_056652347.1  uncharacterized protein LOC103100706 isoform X1

    2. XM_056796371.1 → XP_056652349.1  apolipoprotein C-I isoform X3

    3. XM_056796370.1 → XP_056652348.1  apolipoprotein C-I isoform X2

    4. XM_007491573.2 → XP_007491635.1  apolipoprotein C-I isoform X4

      Conserved Domains (1) summary
      pfam04691
      Location:55 → 111
      ApoC-I; Apolipoprotein C-I (ApoC-1)

    RNA

    1. XR_008911635.1 RNA Sequence

    2. XR_008911636.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.