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    tcap titin-cap (telethonin) [ Astyanax mexicanus (Mexican tetra) ]

    Gene ID: 103043375, updated on 11-Mar-2024

    Summary

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    Gene symbol
    tcap
    Gene description
    titin-cap (telethonin)
    See related
    EnsemblRapid:ENSAMXG00025023937
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Astyanax mexicanus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
    Orthologs
    zebrafish all
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    Genomic context

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    See tcap in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current AstMex3_surface (GCF_023375975.1) 19 NC_064426.1 (36180338..36183137, complement)
    102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172828.1 (1359317..1361921, complement)

    Chromosome 19 - NC_064426.1Genomic Context describing neighboring genes Neighboring gene reprimo-like Neighboring gene proline-rich protein 29-like Neighboring gene synaptogyrin 1a Neighboring gene family with sequence similarity 171 member A2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-macromolecule adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of muscle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables titin Z domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables titin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cardiac muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cardiac muscle tissue morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cardiac myofibril assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in detection of muscle stretch IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sarcomerogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in skeletal muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in skeletal muscle myosin thick filament assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in skeletal muscle thin filament assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telethonin
    Names
    titin-cap

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AstMex3_surface

    Genomic

    1. NC_064426.1 Reference AstMex3_surface

      Range
      36180338..36183137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007239303.4 → XP_007239365.1  telethonin

      UniProtKB/TrEMBL
      A0A3B1JFC1, A0A8B9HBY5, A0A8T2KYA3
      Related
      ENSAMXP00025037260.1, ENSAMXT00025048599.1
      Conserved Domains (1) summary
      pfam09470
      Location:30 → 179
      Telethonin; Telethonin protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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