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    TGFBI transforming growth factor beta induced [ Physeter catodon (sperm whale) ]

    Gene ID: 102992142, updated on 10-Mar-2024

    Summary

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    Gene symbol
    TGFBI
    Gene description
    transforming growth factor beta induced
    See related
    Ensembl:ENSPCTG00005012265
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Physeter catodon
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
    Orthologs
    human mouse all
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    Genomic context

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    See TGFBI in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_04 current ASM283717v5 (GCF_002837175.3) 8 NC_041221.1 (132537981..132569122)
    102 previous assembly ASM283717v2 (GCF_002837175.2) 8 NC_041221.1 (132537967..132569122)

    Chromosome 8 - NC_041221.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 21 Neighboring gene leukocyte cell derived chemotaxin 2 Neighboring gene uncharacterized LOC129392347 Neighboring gene SMAD family member 5 Neighboring gene small integral membrane protein 32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transforming growth factor-beta-induced protein ig-h3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM283717v5 Primary Assembly

    Genomic

    1. NC_041221.1 Reference ASM283717v5 Primary Assembly

      Range
      132537981..132569122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007114263.4 → XP_007114325.1  transforming growth factor-beta-induced protein ig-h3 isoform X1

      UniProtKB/TrEMBL
      A0A2Y9F537
      Related
      ENSPCTP00005017223.1, ENSPCTT00005019004.1
      Conserved Domains (2) summary
      COG2335
      Location:504 → 636
      FAS1; Uncaracterized surface protein containing fasciclin (FAS1) repeats [General function prediction only]
      pfam02469
      Location:513 → 634
      Fasciclin; Fasciclin domain

    2. XM_007114264.4 → XP_007114326.1  transforming growth factor-beta-induced protein ig-h3 isoform X2

      UniProtKB/TrEMBL
      A0A2Y9F3E0
      Related
      ENSPCTP00005017258.1, ENSPCTT00005019039.1
      Conserved Domains (3) summary
      COG2335
      Location:449 → 581
      FAS1; Uncaracterized surface protein containing fasciclin (FAS1) repeats [General function prediction only]
      pfam02469
      Location:458 → 579
      Fasciclin; Fasciclin domain
      cl02663
      Location:133 → 181
      Fasciclin; Fasciclin domain
    Nucleotide Protein
    Heading Accession and Version

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