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    smarcd2 SWI/SNF related BAF chromatin remodeling complex subunit D2 [ Neolamprologus brichardi ]

    Gene ID: 102776648, updated on 29-Sep-2024

    Summary

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    Gene symbol
    smarcd2
    Gene description
    SWI/SNF related BAF chromatin remodeling complex subunit D2
    See related
    Ensembl:ENSNBRG00000012574
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neolamprologus brichardi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
    Orthologs
    zebrafish all
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    Genomic context

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    See smarcd2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272194.1 (119761..130386)

    NW_006272194.1Genomic Context describing neighboring genes Neighboring gene nucleolar transcription factor 1-like Neighboring gene ataxin 7 like 3b Neighboring gene proteasome 26S subunit, ATPase 5 Neighboring gene membrane palmitoylated protein 3b Neighboring gene low density lipoprotein receptor-related protein 2b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006272194 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
    Names
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NeoBri1.0 Primary Assembly

    Genomic

    1. NW_006272194.1 Reference NeoBri1.0 Primary Assembly

      Range
      119761..130386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035915200.1 → XP_035771093.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q4HH60
      Conserved Domains (1) summary
      cd17675
      Location:279 → 358
      SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins

    2. XM_006807523.2 → XP_006807586.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q4HH60
      Related
      ENSNBRP00000016357.1, ENSNBRT00000016795.1
      Conserved Domains (3) summary
      COG5531
      Location:200 → 397
      Rsc6; Chromatin remodeling complex protein RSC6, contains SWIB domain [Chromatin structure and dynamics]
      pfam08430
      Location:11 → 96
      Forkhead_N; Forkhead N-terminal region
      pfam02201
      Location:282 → 353
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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