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    dcaf17 ddb1 and cul4 associated factor 17 [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102688922, updated on 21-Oct-2024

    Summary

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    Gene symbol
    dcaf17
    Gene description
    ddb1 and cul4 associated factor 17
    See related
    Ensembl:ENSLOCG00000007739
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Orthologs
    human zebrafish all
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    Genomic context

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    See dcaf17 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 12 NC_090707.1 (16315661..16329671)
    101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG12 NC_023190.1 (16640207..16654198, complement)

    Chromosome 12 - NC_090707.1Genomic Context describing neighboring genes Neighboring gene tousled-like kinase 1a Neighboring gene methyltransferase 8, methylcytidine Neighboring gene cytochrome b reductase 1 Neighboring gene dynein, cytoplasmic 1, intermediate chain 2a Neighboring gene solute carrier family 25 member 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DDB1- and CUL4-associated factor 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLepOcu1.hap2

    Genomic

    1. NC_090707.1 Reference fLepOcu1.hap2

      Range
      16315661..16329671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006636593.3 → XP_006636656.1  DDB1- and CUL4-associated factor 17

      UniProtKB/TrEMBL
      W5MLY5
      Related
      ENSLOCP00000009394.1
      Conserved Domains (1) summary
      pfam15802
      Location:54 → 528
      DCAF17; DDB1- and CUL4-associated factor 17

    2. XM_015358967.2 → XP_015214453.1  DDB1- and CUL4-associated factor 17

      UniProtKB/TrEMBL
      W5MLY5
      Conserved Domains (1) summary
      pfam15802
      Location:54 → 528
      DCAF17; DDB1- and CUL4-associated factor 17

    3. XM_015358968.2 → XP_015214454.1  DDB1- and CUL4-associated factor 17

      UniProtKB/TrEMBL
      W5MLY5
      Conserved Domains (1) summary
      pfam15802
      Location:54 → 528
      DCAF17; DDB1- and CUL4-associated factor 17
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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